HsaEX6063450 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132887194-132891040:+
Coord C1 exon
chr9:132887194-132887243
Coord A exon
chr9:132889762-132889845
Coord C2 exon
chr9:132890919-132891040
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCCTCCTCATGCAGATT
3' ss Score
10.66
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
CTGCTATTAACTTAGCAAAGCTGAAACTTTTCAGACATTATTACGTCTTG
Seq A exon
ATTGTGTGTTACATATACTTCACTAGGATCATTGCATTTCTCCTCAAACTCGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Seq C2 exon
CTCCTGGATGAAACGGCCACACTGGTCTTCTTTGTTCTAACGGGGTATAAATTCCGTCCGGCTTCAGATAACCCCTACCTACAACTTTCTCAGGAAGAAGAAGACTTGGAAATGGAGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-'24-24,'24-23,26-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(20.5=100)
A:
PF068148=Lung_7-TM_R=FE(34.6=100)
C2:
PF068148=Lung_7-TM_R=PD(30.8=58.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTAACTTAGCAAAGCTGAAACT
R:
ACGGACTCCATTTCCAAGTCT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)