MmuEX6100326 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31207679-31218775:+
Coord C1 exon
chr2:31207679-31207728
Coord A exon
chr2:31209067-31209150
Coord C2 exon
chr2:31214244-31218775
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCCTCTTTCCTGCAGATT
3' ss Score
12.58
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTG
Seq A exon
ATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Seq C2 exon
AGTGACGACATCGGGTGTGATGGAGAATATGAAGAAGGTGAAGAAAGTGAGCAACGGTGCTGTGGAGCCCCAGGGCAGCTGGGAAGGCACCGCGTGACAGCAGGGCTGAGGACTGCTGTCAATGAAACTAGCTTATTCATAGCCAAGCAGTGAGCAAGCGCGTTCCTGACAGAACGATGGCATCTCCCAGCGGTGACACTCCAGCCAGCGCTCAGCGCTCATGCTGAGCAAGTGCCACGGACACACATTTTTGTACTCTTAGGATCTGGATTGTGGTGTGGGCTACAGGCAGCTAGGACTGCCCTCAGTGAGGGCGGGAAGGGGCTTAGAGGAGGAGTAAAGGACTGGAGTCTGATTTACCTTGCTAATTGGGAGCCTGGGTCTGTGCCAAGGAGCCCTGTGGCTGCTACTCAGAAAGGCTATGGGGTGGGGGAGCGGGTCTGCGCTGGTCAGTGCTGTGGAGGCTGGGGAGGGTGTGACTCGCTGCTCAGCCTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
PF068148=Lung_7-TM_R=FE(9.2=100)
C2:
NO
Main Skipping Isoform:
ENSMUST00000056433fB10783
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTTCAGACATTACTACGTCT
R:
TGCTCACTGCTTGGCTATGAA
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types