RnoEX6016398 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10638882-10641834:-
Coord C1 exon
chr3:10641785-10641834
Coord A exon
chr3:10640489-10640572
Coord C2 exon
chr3:10638882-10639003
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTCTGTTCTGCAGATC
3' ss Score
10.81
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
CTGCCATTAACCTAGCAAAGCTGAAGCTTTTCAGACATTACTACGTCCTG
Seq A exon
ATCGTGTGCTACATCTACTTCACCAGGATCATCGCCTTTCTTCTCAAGTTCGCTGTTCCCTTCCAGTGGAAGTGGCTCTACCAG
Seq C2 exon
CTGCTGGATGAAACAGCCACACTGGTGTTCTTTGTCCTGACGGGGTATAAATTTCGCCCAGCTTCAGATAACCCCTACCTGCAGCTCTCTCAGGAAGAAGATGACCTGGAGATGGAGTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589-'30-30,'30-27,31-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
PF068148=Lung_7-TM_R=FE(9.2=100)
C2:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTAACCTAGCAAAGCTGA
R:
ACAGACTCCATCTCCAGGTCA
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]