BtaEX6046677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100477533-100480747:+
Coord C1 exon
chr11:100477533-100477582
Coord A exon
chr11:100479606-100479689
Coord C2 exon
chr11:100480626-100480747
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTGTTCCTCATTAGATC
3' ss Score
8.54
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CTGCTATTAACTTAGCGAAGCTGAAACTTTTCAGACATTACTACGTCTTG
Seq A exon
ATCGTATGTTACATATACTTCACCAGGATTATTGCATTTCTCCTCAAACTCGCTGTTCCGTTCCAGTGGAAGTGGCTCTACCAG
Seq C2 exon
CTCCTGGATGAAATGGCCACGCTGGTGTTCTTTGTTCTCACGGGGTATAAGTTCCGTCCAGCTTCAGACAACCCATACCTACAACTTTCTCAGGAAGAAGATGACTTGGAAATGGAATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'24-28,'24-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
PF068148=Lung_7-TM_R=FE(9.2=100)
C2:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTTTTCAGACATTACTACGTC
R:
ACAGATTCCATTTCCAAGTCATCT
Band lengths:
151-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]