MmuALTA0008079-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31022541-31023734:+
Coord C1 exon
chr2:31022541-31022663
Coord A exon
chr2:31023682-31023683
Coord C2 exon
chr2:31023684-31023734
Length
2 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GTCCTCTCTTTGCTGCCCTCAGA
3' ss Score
-10.48
Exon sequences
Seq C1 exon
GATGATGTGCGGCATAAAGTCCATCTCAACACCTTCGGGTTCTTCAAGGATGGGTACATGGTGGTCAACGTCAGCAGCCTCTCTGTGAACGAGCCTGAGGGAGCCACGGACAAGGATGCTGAG
Seq A exon
AG
Seq C2 exon
ATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0400010=Sas10_Utp3=PU(27.1=46.3)
A:
NA
C2:
PF0400010=Sas10_Utp3=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACATGGTGGTCAACGTC
R:
TCCGATCCAGACTGAATCCGA
Band lengths:
94-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: