MmuALTA0008079-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31022541-31023734:+
Coord C1 exon
chr2:31022541-31022663
Coord A exon
NA
Coord C2 exon
chr2:31023684-31023734
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
CCTCTCTTTGCTGCCCTCAGATC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GATGATGTGCGGCATAAAGTCCATCTCAACACCTTCGGGTTCTTCAAGGATGGGTACATGGTGGTCAACGTCAGCAGCCTCTCTGTGAACGAGCCTGAGGGAGCCACGGACAAGGATGCTGAG
Seq A exon
NA
Seq C2 exon
ATCGGATTCAGTCTGGATCGGACTAAGAACGATGGCTTTTCTTCTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-2-2,2-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0400010=Sas10_Utp3=PU(27.1=46.3)
A:
NA
C2:
PF0400010=Sas10_Utp3=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACATGGTGGTCAACGTC
R:
TCCGATCCAGACTGAATCCGA
Band lengths:
94-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: