HsaALTA1034370-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130075636-130076462:+
Coord C1 exon
chr9:130075636-130075749
Coord A exon
NA
Coord C2 exon
chr9:130076412-130076462
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTGTTTTTACTCCCCATTAGATT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GATGATGTGAGGCATAAAGTTCATCTGAACACCTTTGGCTTCTTCAAGGATGGGTACATGGTGGTGAATGTCAGTAGCCTCTCACTGAATGAGCCTGAAGACAAGGATGTGACT
Seq A exon
NA
Seq C2 exon
ATTGGATTTAGCCTAGACCGTACAAAGAATGATGGCTTTTCTTCTTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358-5-3,5-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains