GgaALTA1014795-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5828668-5829332:+
Coord C1 exon
chr17:5828668-5828793
Coord A exon
NA
Coord C2 exon
chr17:5829282-5829332
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCTTCTTAATTGTCACATAGGTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GATGATGTGAGGCAGAAAGTGCACCTGAATACATTTGGCTTCTTCAAGAATGGTTTCATGAAAGTCAATGTGAGCAACCTTTCATTGAAGCCACCTGTGAATGCTGATGACAAGAGCAGCTCATCA
Seq A exon
NA
Seq C2 exon
GTGGGGTTCAGTCTGGATCGAACAAGGAATGATGGGTTCTCCACTTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052-6-5,6-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTTCAAGAATGGTTTCA
R:
TTCGATCCAGACTGAACCCCA
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]