MmuINT0130156 @ mm9
Intron Retention
Gene
ENSMUSG00000043102 | Qrfp
Description
pyroglutamylated RFamide peptide [Source:MGI Symbol;Acc:MGI:3630329]
Coordinates
chr2:31661688-31666038:-
Coord C1 exon
chr2:31665927-31666038
Coord A exon
chr2:31664439-31665926
Coord C2 exon
chr2:31661688-31664438
Length
1488 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCTCTCCCTCCTCTGCTCAGATG
3' ss Score
9.79
Exon sequences
Seq C1 exon
ATAAAGCGGGGGAACCCCAGAGCCATGCCTGCTGGACCGGGACCTGAGCAGCTCTGCCTGACAACTGGGGTCCAGGGACTCACCTGCCCTTCTTAGAGCAGCCCTCAGCACA
Seq A exon
GTGAGTACAGCAAGGGACGGGAGGCCAGGCTCTCCAGGTGAGCTGGGTGCAGGCGGGTACAGCCAGCACCACGAGCCACACACCAGGAAGGGCGGGTGTGTGGGAGACCCGCAGCTTCATCCTCAGCTCAAGTTCCACCAGAGCCAGCCGGCCCTAGATGCCAGCCAGGAAGTATTAATCTCTGGGGATAAAGACCATTCCTGGTCCTCCCCTTCTATGGGGAGAAGGGAATGAGACTTGTCTGTCCCATGTGGGGGGCCCTGCCCTCTCCACCCGTGCCTGAGGAAGCCCCTTTAGCAGCAGCAGACTGGAGGCTACTCCAGGCCCTGGGGACTAGGGGGCTTAGCAAGCTGGATTTGGGTAGAAAGCAGGGCTGCTTTTGTTGTTGTTTTTGAAGCTTTCTGGCTGCGCTCACTTCTTTGAAATGTTTTCAAGGGAGCTGTTTCTGGAAAGAAGTCGTCCCCCCTGTCCCCCCCCCTCCCCCCTCCGTCCCCCGCCACTTCCAGCTTCAGGGGCTTCCTCAGAGGATGAGCCAGCTCGGCTCAGCTCACCCATGGTCACTGCAAACACAAGCATCCTCTGTGAGGGAAGGGAACAGTTCCCACCAAGGGATGTGGGGGGGGGGACCTCGAGACAATGAGACAGGTATGGGGGCACAGAGTAATGAGGCTACCTTGAATTCAGCTCTCTTTCTTATAAAGCTGTAGGACCTAGGGCAAACCCTGAGGCTCTCTGTGCCTGAGGTCCTAGGGGGGGTGGCCCCGGGGTTGGTGGGCTGGATGGCTATCATCAGGAAGCAATCATTTCCCTAGAGACTGGCACAGGGAGAAACCACACTGACATTAGAGCCCAGAGCTGTGTGGTGGGGCAGCGTTTGCTGTAGACAGACTTACTGTACAGAGAAACCCATTCACCAGAGCCTGTCCTGCCCAGTGGGAGCTCAGTGGGTGCTGGCTGTCCCCAGCCTTGCCTCTAGCTCCTCCCCAGGTAGGAGTTTGACTTACACAAGGGCCACCAGGCCCATTTCCCCCTCCCAAGAGCAACTTGTTCCTGAATTAGGGAGACAGTGGGGTTTCCCAGCAGAGCTGCTAGACCTATTCATTATCAAGTTGAAAACACGGCAGCTTCTCACTCTGCCTACGGCCCAAGAGTCAATAATTATAATAGAAAATTGAACCCAAATGCACACAGCCCCGAGGGCCACCCGGGTACCTCTGCAAGCCAGCTGGCAGCTCTGGTATTCCAGTACTGAGCCACCAAGGCAGGCAGCTCCCCGGCTACAGGTGAATAGGAATCAGACTAATTGGTCCAGCTGGCTCCCGCGGTGGCTACGACAGCCTGGTGTCCTGGGTGCTAGGGAACCAGGCTAAGCACAGTCAGCAGCTATCCCTCCAAGGGCTGCCCAGACCTTGGGAAGCCTGGGGCCAGGGATTGCATGTGGCCAAATGCTGGCCACTACCCCCTCCTCTCTCTCCCTCCTCTGCTCAG
Seq C2 exon
ATGAGGGGCTTCCGGCCTTTGCTTTCCCTACTTCTCCCTCTGAGTGCCTGCTTTCCCCTGCTGGACAGAAGGGGACCCACAGACATCGGTGACATCGGAGCCAGGATGAACTGGGCCCAGCTGGCTGAGGGACATCCCCCCAACTCGGTTCAAAATCCACAGCCACAGGCCCTGCTTGTGGTGGCCAGGGAGCAGCAGGCCTCCCACAGGGAGCACACCGGCTTCCGTCTAGGGAGGCAAGACGGTAGCAGTGAGGCCGCAGGGTTCCTGCCCGCCGACTCGGAGAAGGCCAGCGGCCCTCTGGGGACTCTGGCAGAGGAGCTGAGCAGCTACAGCCGGAGGAAGGGAGGCTTCAGCTTCCGCTTTGGACGGTGAGGGCCTGCGTGGACTCTGCCCCGTCTGACCGTCTACTGTTGCCCCGGCCCCAACCTCAGGAACCCAGACCCGGAGAGAGTATCACAGTGCACTAGTGGTGGTGAATAGGTGTGTTCACATTTTCATTTCCAACTTTGCTAAAGTGAGAAATCTGGGTGGTGTTCAAGAAAAAAAAAAAAAACCAAACAAACAAACAAAAAACCAAAATGAGCAATCCCCTCTCCTCCCTCCACCCCACCCTACTCCTGAAACCCTGCACACAGGAGGACCAAGCTTGTCTTGGTCAGTAAGACAATGTGTCCTTATCCTAGCCCATGACTCGGGCTGCTGTCTGTCTCAGCCTCCGACTTTCCCCAGTGGTCTGACTGGAGCAGTCCCCGGTCCCCAGTGGCAGCGCATTGAGGCTGTGCTGGGGCCGTGGATACAACAGGCCTCTGGCTCTGTTGTTCATTTGTCGGTAGGTGGACTGAGAGATTACAGCTGGAAATCAAAGTTCTGACAGTCTCCGAAGGGACACTGGTAGCTGACATCTGAAGGGGCGCGCTGTGAAAGAGCGCACTCCGCTGTGTATAAAATGTGAGTCTGAAAGTAGAGAAATGAAGGAGAAGAAAATAACCCAGACACAAACAAACCCAAAACAGTCAGTGTGTTCTCCATCCCATTAGCACAAGACGCCTCTGGCAAGAAAGCCAGCAGTGGCACCAAGCTGCCCACTGAATGGCCTGTGCATCCCCTCTGGCTGCCCATCGCCCCTTGTCCATGGTAGTATTAGCCAACTTAAGGGCCTCATGGGGACTGAACTCTGAAAGGGTGGGGTTTTTTGTTTGTTTTTGTTTTTGTGCTAAGCAAGGTTGAGTTTCAAATACCCAAACTAGGAATTGCCATGTGTATCTTTTGAAATAAAAGTTGTAACAACTGCAGCATCATAATGGGATGCTGGCCTCTTCCTTCCAGGTCCTCTGGGCCCCAGAAACTTCTTTTCTTGAGTTCCTGAAGCCTTCACTTTGGGGAGATGGAAATCAGGCTGCCTGTACCCCGTACACCTCTCCGAGCAGCCCCTTAATTGGCAACTGGGCGAAGGGAGAGAAGGAACAGGCTGTTTCCCTCTCCACTTCCCTGTTCCCTATGTTTCTCAGAACGAGTGTGAGAGGGAAAAAAAACGACATCTCCACCTGGGGGAGGCAAGGGGAGGTGTGTGTAGGGGGACAGGCTCAGTCTGGGCTGTGTGCCGGCCTGGGGCCAGCAGAACATCCCTTTCAAAGGCTGCCGAGTCTCCTACATCCCATCCTGGGTCACACACAGCCGTCAGAAGCAGCTCACTCCAGGGCTGGCTGTGACTGCTGAGATGAGAACTTATATTGATGTTTCTATGGCAACATCTCCCCTCCTCCTTGCGAGTAGCGGCTTGCCCCCGTTCACAATTGAATAATTTTCCATTGAGCTGTCACAATTAATTGGTGGATTTTTATTAGCCTTTTAGAACCACACTGGGCCAGGCCCAGCTTGGCACCTCACAGTATTCTGGTGTTTTCCATTCTATTAGTGACTTACGTCCTCAGTAGCAGCTTTCAATCCTCAGCAGCCAGGAAGCCACTTCATTAAGGTTGACAGATCAGAGCCACAAAAGGACCATGTTGACTGGGGAGCAGGGCTGGGAGGTGAACTGAGGAGGGGGCCAGAGCCAAACACCTGACACAGTGGTGCACTGACTCCCCCCAGAGCCACCTTGGGCTCCCCAGGGGCCTTGCACATGGGTCCTGGGCTGCAGTCACAGGGACAAGACAAGCACACTGTAAGGCACATCACTCTGCCGTCCTTACCATCTCAGGAAGATGTGACGGAGGGTGTGTCCAGCAAAGGAATGCTACTGCTCTCCTCTAGTGTGGACATCATGGGCACCACCACACTCCTTTGGGACAGTCCTGAGAACACAGGTCATCTGTGGACACAGAGAGGTGGCTGTGGTTTCCCCAGCTCCCTCACCAGCCAGGGATGCCCACCTGCTTCTGTGGGGCAGTACCCTGGCTCATTCATACACATATGAGACAGGCTGAGACAGAAGACCACAAGCCAGGGCTGAAGGGCACCCTGGAGCCTGGGCCCTGGCACCCACTCACGCCATGAGGCTGCACACCCTCACTCACTCTGGGGGTAGGTAGGGCTCATTTTGAGTTTTCGTCTTTTTTGATGCTGAGGTTCCAGCTCAGGCCCTCATGCATGCTAGGCAAGTGCCCTGGCACTGGGCTTCACCCCGAGCCTGGCAGGTTCTTAATTTAGCAGGATTAGATTAACCTCGACGGAGAGGGCTGAGATGAAGGGGGAGGCCTTCAAAGGAACGCATCTGCTGTCATTACCTTTAATCATTAAAAGAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043102-Qrfp:NM_183424:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111093=RFamide_26RFa=WD(100=99.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCTTAGAGCAGCCCTCA
R:
CTCAGCTCCTCTGCCAGAGTC
Band lengths:
352-1840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: