HsaINT1028643 @ hg38
Intron Retention
Gene
ENSG00000188710 | QRFP
Description
pyroglutamylated RFamide peptide [Source:HGNC Symbol;Acc:HGNC:29982]
Coordinates
chr9:130892702-130895981:-
Coord C1 exon
chr9:130895697-130895981
Coord A exon
chr9:130893839-130895696
Coord C2 exon
chr9:130892702-130893838
Length
1858 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTCTCTTTCCTCTGGGTCAGATG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGCAGCCCGCCTGCCCTCTCATCAGACTACATCCTGTGTGAGGTTGTTTTTATCAACGCGGTCAGCACTGCCCCTCTTCAACAACAGCGTCCCCAATGGAATCCCAGGGTCAGGAATGCGCAGCAGGCAGTCGGCAGAGCAGCAAGCGCACCGCGGGCCATATAAAGCAGGGAGAGCCCAGGGGCCATGCCTCCTGGACGAGGACCCAGAGCAGCTCTGCCCAGCCCAGCCCCGGAGCCCAGCGATCCACCAGCCAGCCTTCCTGGGAGCAGTCCCAGCCACACG
Seq A exon
GTGAGCATAGCTGCCCTGTCCCCAGCAGGAACCCCAGCTCAGGCCCTGCCCAGGCAGGAGCCAGGCATGGGCAGTCAGAGGGCACACAGAAGCACAGGGAGGGAGTGCCCGGAGAGGGGACACCAGTGCCTCCCCTGCCAACAGCCCAGAGCAGCACAGATTGGTCACGGCTGCCCTGCCAGGGCTGGGACCCAGCCTCACCCGTGCTTTTCCTGTCCCTTCCTGGCTGTGGGGCCTGAAGCCCTGACTCGCGCTGGGGCCGCCTGTCCCGTGATGAGCATCCCCACTTTCTACCAGATTCTTGAAGGGGTGCATGAACCCCTAAAAGGGGTGAAGGGCCACTCCAGGGCCTGCTCTGTCAGGCTGTCTCCTTTCTAGACACCCAGAGGCCACTCCCGGGTGGATTTATCCACCAGGATGCAACGGTCCCTGGTCCACATCGCAGTCAGCAAAGTGCTTCCTATGGGGAGGAGGGAATGGGCTGGGCCGCTGCAGAAAGTCACCTCGTGGAAGCCCCCACTCTGCCTGCGCCCTGATGGAAAGGTTTTCCTGGCAGCATGAGGGAGGTCACTCCATCCCTGGGGGACGAAAGCTTAGAAGAACTGGATTTGGGTAGAAAGTGGGGTTGCATGTATTATTTTTTTAAAAGCTTCCTGGCTGAGCTCGCTTCTTTGAAATGTGTTCGAGGGAGCCATTTCTGGAAAGGGCTCTGGGGACTCCTGTACTGTCTTCTCCAGGGCCGGTGCTCTCTAGTCTAGCCTCAGTTTGACTCTGCGGAGGACAAGCCAGCTCCAGCTCCCCCGCGGTCATTGTCAAAAAGGTTTTCTTTGCCAGACAAGGGAGCAAGTGTTACCAAGGCAGGTTCATTACAGGAGGCTGGGTTTCAGATCCCCCGAGTGCCATGTGGAGTACAGAGGAGGGAGTTAGGGCACGCCTTCCTGAGTCAAGCCCAGTTAGACCTGGGATTGAACTCTAGCTCTGGCACTGATAAGGCCATGAGATCTGGGGCAAGTCACCTCAGCTGTTTGAGACCGACACCACCCCTGTGAAATAGGAGGGTTGGGAGTACCTAGCAGATATGTATGCTTCTTGAAGAAGCCGTCTGGCCATTAGAATCATGAATCCAGAGCCTCCACTTTCTGGCTGTGTGGCCTGGGCACAATCTCAGTTTTTCTGACAGTTTTGTTGCCTGAAAAAGTGGGACTGGCCGGACCTACCAAGCAGGAGTACTATGAAGATGAAGTACAATCACATGTGTGAGCTCTTGGCTCAGAGCCTGGCAGACCTACGGTGCCCAGGCCCCAGTGGTGTCCACACACTCCTTCCCAGGTGGGTGTCCGAATTAGGCCAGGACCATCCAATCTGTTTCTGGCTTTCAGGAGCAACTCGTTCCCACGTGAAAGAGACATTAGCAGGATGTCCCAGCTAAACAGCATAGCTAGACCCATTTATTATCCAGTTGAACACTAAGGGAGATTGATGCTTTTAACTTTCCACCCCATGGCTCTGCAATGATATGGCCATTTTATAATAAGAGAAAAATGAGCATACATTTGCTGACTCTCCCGGGGCCGCCTGGGCACTGCTCTGCCAGCCAGCAGCGGTGGATTTACGGTGCTAAGCTGCCCAGGCACGCAGATCGTGGGGACTGCAGGAGAAGAACCGGCCTAACTGGCACAATCACCTCCTGATCCTGCTAATAAAACAGTGGCCTAGTCCCAGCACTGCTCGGAAGCCGGGCTCAGCTGAGCCCCCTGCTCACATCTACGCTGCCAGCCTGTCCCGGGGAAACATTTTGGTGAGTTGCGCTTGGCCACGTGTGCAGCCTGTCACTCTGCCTCTCTTTCCTCTGGGTCAG
Seq C2 exon
ATGGTAAGGCCTTACCCCCTGATCTACTTCCTCTTCCTGCCGCTGGGCGCCTGCTTCCCTCTACTGGACAGAAGAGAGCCCACAGACGCCATGGGTGGCCTCGGAGCTGGAGAACGCTGGGCCGACCTGGCCATGGGGCCCCGACCCCACTCCGTGTGGGGTTCCTCTCGGTGGCTGAGAGCTTCACAGCCACAGGCCCTGCTTGTCATAGCCAGGGGGCTGCAGACATCGGGCAGAGAGCATGCTGGCTGCAGATTCCGCTTCGGGAGGCAGGACGAAGGCAGTGAGGCCACCGGCTTCCTCCCTGCTGCGGGGGAGAAGACCAGCGGCCCGTTAGGGAACCTGGCTGAGGAGCTCAATGGCTACAGCAGGAAGAAAGGCGGCTTCAGCTTCCGCTTCGGTCGGCGGTGAAGGGCCAGGACGCCTTGGAAGGATTTGCTTCTTGGACTCACCCCCATTGTCTTCACTCCTGCCTTCTCCCCCAGTCTCAAAGACCACGACACCCAGATGATGTAGGCTTGGTTACGATGAACGATCCATGGTAGGACAGGTTAGGTGTGTGCTTACTTTTGATTTCCAACTTTGCTGAAGCGAAAAACTAGGCAGTGTCAAAAAGGAGGCTGTCTTGGAGCCTCGGTCGTCCCAGCCTCTCTCTTCCCCTGGGGCTTTGACTCCGAGCAGCCCCCTGGCCCCAGGGGCACGGAGCTGAGGCTGTGGCTGGGCCATGAGTGTGAATAGCAGAGCGAGGCAGCGGGCTGAGTGCTTACAGTTGGGTAATCAAAGTTGTGACAGTCTCTATAGGCACGACTGCGGCTGACATCAGAGTGCAAATGAGTGCATTCCACTGGGTACAGAGGATGGTTCTGAAAGTTAAAAATGGGAAAAAAGAACCCGATCCCCTTCTCCATGCCATGAGCACAAGATCCCCCTGGCAAGAAGCCCCTGCTGTGGTTTGCCTGCCCCTCTGACCGCAGCCCTTCTCCGCGGCCCAGTGTTAGCCCGGCCAGGAGTCTCCTGGGAGATGCGTTGGGAAGGAATCCCGTTTTTGCTATAGCAAGGTTGCATTTCACATGTTCAAAATCAGAATATGTCGTGTGTATCTTTTCAAATAAAAGTTGTGACAACTGCAAAACCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188710:ENST00000623824:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111093=RFamide_26RFa=WD(100=97.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCCCTCTCATCAGACTA
R:
TGTCCAGTAGAGGGAAGCAGG
Band lengths:
347-2205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains