MmuALTA0001550-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25140082-25140692:+
Coord C1 exon
chr2:25140082-25140211
Coord A exon
chr2:25140365-25140456
Coord C2 exon
chr2:25140457-25140692
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTACCTATGAGTTACACAGGAC
3' ss Score
0.34
Exon sequences
Seq C1 exon
GCTATGCGGACACTTAGTTGGAAGCACACCCTGGGCCTGGTGACAATGGATGTGGAGCTTGCTGACCGCACCCTGTCTGTTGCGGTGACCCCAGTACAGGCAGTGGTCTTGCTGTATTTCCAGAACCAAG
Seq A exon
GACAATCCACGTGCGTCTGGGGGTCCAGCTAGCTAACAGGTATTGGAGCAGGTATAATCTTCGGTACCTGCATCCTATGGCTCTGCACACAG
Seq C2 exon
CCAGCTGGACCCTGGAGGAACTGAGCAAGGTGGTGAAGATGCCTGTGGCACTGCTTCGAAGACGCATGTCAGTGTGGCTGCAACAGGGTGTGCTGCGGGAGGAACCTCCAGGCACTTTCTCTGTCATTGAGGAAGAGCGGCCTCAGGATAGGGACAACATGGTGCTGATTGACAGTGATGATGAGAGTGACTCAGGCATGGCCTCCCAGGCTGACCAGAAGGAAGAGGAGCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965-18-17,18-16,18-15-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.291
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.2=100)
A:
NA
C2:
PF0088817=Cullin=PD(15.9=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACACTTAGTTGGAAGCA
R:
GCATCTTCACCACCTTGCTCA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: