MmuEX0023096 @ mm9
Exon Skipping
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75500718-75501771:+
Coord C1 exon
chr2:75500718-75500813
Coord A exon
chr2:75500947-75500955
Coord C2 exon
chr2:75501628-75501771
Length
9 bp
Sequences
Splice sites
3' ss Seq
CAGCAGAGGTAGTTATGGAGGTG
3' ss Score
-21.87
5' ss Seq
ATGGTGGAT
5' ss Score
-1.34
Exon sequences
Seq C1 exon
GTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAG
Seq A exon
GTGGTGATG
Seq C2 exon
GTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-'9-14,'9-13,13-14
Average complexity
C2
Mappability confidence:
70%=67=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=0.750 C2=0.456
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGTGGTGGAGGAAACTT
R:
CCACCACCTCCATAACCTCCT
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: