MmuINT0052972 @ mm9
Intron Retention
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25209128-25209813:-
Coord C1 exon
chr2:25209753-25209813
Coord A exon
chr2:25209247-25209752
Coord C2 exon
chr2:25209128-25209246
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCAGCACTAATCCCATCCAGGGC
3' ss Score
3.75
Exon sequences
Seq C1 exon
GTGGGCTGTCAACGGCTGTTGAATGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
Seq A exon
GTGGGTCTACTTCTTGGCCTTCATAGGGCAAGGGTAGCGACTCTAACAGTGACACAGGGCTGAGTAAGGAAAGGACCATGTCCCTGACCTGGGACTTGGTCTGGTATGCTATTTGAGATGTAGTAGGGGACCCACTACAGCTTTTGAAATGATAGGACCTGTGTTTTGGGAACTGGGCATAAGCTGAAGTGGGTAGCATGACTTTCCAGTCATCCTAGGAACAGGCATAGCTACCCCTGAGGGTTGCTATGGGGCCTTTGGAGTCCCTAGCCACAAAGCTCTGCATGCCTGTTCTGTCCTGTTGTGGGGTAGGGTACTGGGGATATATAACATAGTGTCTCTGGGCTGTTAAAACAGCCGGGCCAGCTGGTGGCACATGCTCCCAAGCCTCCCAGTGCTCACTTTACTGTGGCAGACCTATCTTAGCCTTCCTTCCAAGGTGATGGGTAGTGGCTGGAGCTTGTACTGGCTGGCTGGCTGCTGGTCCCAGCACTAATCCCATCCAG
Seq C2 exon
GGCTGGTCTACAACTCCTCTGGCACGGAACCCTGTTATGACATCTACCGGTTATACCAAAGCTGTGCTGACCCCACTGGCTGTGGCACTGGCTCTGACGCTAGGGCTTGGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958-Dpp7:NM_031843:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: