GgaINT0126631 @ galGal3
Intron Retention
Gene
ENSGALG00000009105 | DPP7
Description
NA
Coordinates
chr17:698914-705542:+
Coord C1 exon
chr17:698914-698974
Coord A exon
chr17:698975-705423
Coord C2 exon
chr17:705424-705542
Length
6449 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GTGCTCTTCCCACTTGGCAGGCG
3' ss Score
6.41
Exon sequences
Seq C1 exon
GTTGGCTGTGAACAAATCCTTGCCCACACAGACCCTATTCAAGGCCTGGCAGCTCTTGTTG
Seq A exon
GTGAGTTAATCTTATCAGATGGATCTTTTATTTAAAATCTTGTTCTCCAGAAGCATCTCTATGTAGAGTTGTCTCGTTGTGTGGGCTGTGTACTGTGGGAGCTGTACAGCTCCACTTTCCCCCTAGGATGTTCTGTACTGTATGAGGTTTCAGCCGTGGCAGCCCCTCACACTGCTGACTGTCCATGAGATGACTTCTCAGGATCTCCGTTCTGATGGGTTTACCCCATACTGTGGCTGAAGTGCCGCAGGTTGAGTCACGATCACTGAAGGAGGTTCTCTGCTCTGCTGGTTGAGGTCAAGGCTGTCATCAGAGGGCCCTGCGGTCCTAACTGAGTGGCAAGACAGTCTTAATTGTCTGTGTGAGTATTTAATTTGTCACTCAGCAGTGTTTGTAAGGAAAACATTAGAGGCTGATTCCAAAGTTCTTTCAGGAGCATCAGTTCCAAATCACAGCTAAAACCGTTTGGCTGGGGAGCTAGACAGGTGGCTAAAATACTGAGGTCTTGGCAAACACTGTCACATCTGATGGAGCTTTCCACGTCCTACTTCCCCTTGGAAGCAGTGCTCGGCCCCTGTCTCTTAGCGGCTAACAAGCTCAGAGTTGCTTTCTGCCTTCTGCTGGTCAGGCGGTGCTCTGTGCCCCTCCTCGGCTCACCAGCTGTGTTAGCCTGGGGCAGCTTAACCATGCAGGAGGCGTGATCAACCAGAGCTCGGGGCAGGGGGCCGGCTCTCTTCCATACCTGCCCCTCGGTGTCGTACAGGTAAACACTGTCTTCCTTTCGCATGTGCTGTAGCAGTCCACCCCCTGTGAGGTAAAGCGTCGACCTGTGGGCTGTGACGCTGAACTGGCAGCGGCTGAATGGGGACAGTGTGAGCGTTGTCCACTGATCGCTTACAGGACAGTAACACTCTGTCTCACTGACGTGAATCCATTGCTCCACCTGCAAAGAACCAGACCAGCGGTGATCCATCCGACTGTGCTTCAGGTGGTATCGGTGTCGTGTCAGGCTTACTTGGTTTGTAGTGAGGGAAACCAGTGTCTCAACGTGCACCGAATGCAACTCAAGGTGCTGAGTTGTGGGAGGCAACTGAGCTTGTGTGGTTGGAAGAATCTGATGTCAGATATGATGAGCTGACTGACTTTATAGATCTCTGTCAATTCTCAGTGAGGAAGTGCTTTAAGACACCTTTGTTCCTTTGAAAGAAACAGCATTAATGTTGGGCCGAGCCGTGAGCCTTCACGTTTTCTAACGGGCATTGCTGAGTGACCTGTCAGGATTCACTTATCCCGGCTGCAGGGAAGGAGCATCTCCCTGACGGAGTGTGGGTCACCTCCTGGCTGCTCCTCCCCAGGGGAGGGTGGGCTGCTCCCATGCCCCCAGCAGGCTGCACACTGCTTTCAGGGATGGGAAATCAGTCTGAAGAGGCTTCATTGGCATCTCAGGACTTTAAACCCATCTCTCCTAAAATCGACACTGGTGTCTTCAGTGCAGTCCATTTCTCTCCTATCTGCCAACCCAGCACAAACAGGGGAGGTCAGGTTGTGTTTCTGGGACAGGTGCACAGCCAGTTGTGCATTTTACTGCAGCAGCAGGCTGCATCCGCACCCTGCATTTTGCTTTGTGCTCTCATGAGTGGGGTGTGACGGCAGGGCAGCTCTTAATGTGCACAGCTGTAACACCAGGCACATCTTCTTAATGAAGTGTGTTGGCCTGACGTGCTGCTGTGCCAGTCCACCATAGTTATTGCCCATCCCTCTGGTGTAATGCACCAGGGCCCAGCTGTACAGAGTCTCCATTTTGGATCAGGTTTGGTATTACAAGAGCAAAAGAACTTACTCCTTTCAGCGTCCTTCCTCCGATGCAAAAGATCCCATCTTTGGTGGCAGCCATGCCGTGATCGCAGCGGGGGAAGGTCATGGCACGGTTGTGTGCCCAGCGCCGGAGGCGAGGGAGGAAGCTGAAGGTGTCTGGTAAGGTTCTGCCTGCTGAGAAACCCCCTGGGGGAAAAGCACAGGGCTGGGACATGACGTCCATCCGTCGATCTCAGGCATCCACCAAACCCTCTGCAATACCAGCAGGGCTGATGTCATGTGATATTTAAAAAAAAAACAGCTGAGCTTCCTAGATGTTTCAAAGGAAGGAACCTGTTCCAGTTCTGTCTGAAGACAGTTTTCCACAAAAGACTTTTCTGTTGGGGTACTCTGGGCGTAACCAGGAACCAGGAGCCCCTCTCCTTAGGGACTCTGCTGCAGGATGGGTTTTTTTTAAAGGAAACCATTTGAAATTCTCTGAGCTTTGGACCTTTGTCAGAAGGTCAGAGCCACTCTGCCATTGCTGTTATCATCTTTGTCTCTATTGGATTCTCCCTTAGTATTTTGGGGCTATGTTACAAAAAGCTCCTTGCAGAACAAAGGTGCTGCTGCTGGAAGAGTAAATACCTTTAATTTTCTGCTTGTTGAATTCCAACCTGCAGAGAGTCCTTGCAAACAGCAGAGATGATGCTCCAGTTTGGGCACGTGCCCATCTCCCTGACCTCTGTGCATTCATTCTCTGCATGAGTTGCGGTTGAACCCCAGTGGGCAGCTGAGCCCCACACAGGTGCACGCTCAGTCCCTACCGGTGGGATGGGGGAGAGGAGTGGGGGGGATGGAAGATAAAACTCATGGATTGAGGTGAAAATAGCTTGCTGTGTAAAGCAGAGGCTGTGCAAGCAGGCATAGCAAAATGAAGAATTTGTTTGCTGCTTTCCATTAGCAGGCAGACATTCCAGGAAAGCAGGGGATGTAATGTTTTCCTGGAAGGGCAAATGCCATTGCTCCCCACGACTGCCCTCCCTCCTTCTTTCCTCCCACTCCTATTGCTGAGCACAATGCTGTATGGTTTGGGATGTCCCTTTGGCCCGCCTGGGTCCGCTATGCTGGTCCTGTCCCCCCCCAAGTTCCCTGTGCAGCCCCAGCCATCACCAGCAGTGGTCAGAGCTAAGCAGGAGCGTGAATTGCAAGCAGTAGGTGTTGCATTTAATGTTGTGGGAAGAAAACAGCTCAAGCCATTCCGGCTGGCACTGGGTTTGTGCTTAATGGAGCTGGAAAAGGATGTGAGCTGTGAGTGTTACTGGGGTGGGTGCAGGCTTGGGCTCTGGCAATAAGTTGGTTTGGGATAGATTTCTCACCTGAGATGTAGAGGATTCCCTCATGGGTTGTGCCCGCGTGGTCAGCAATAGGTATAGGGAAGGGAGCTGCAAACTCCCACTTGTTGGCAGCCGGCTGGTATGACTCCACGGTGTGGGTGAGGGTCCCCAGCAGCGTCCCACCCCCCACCACAAAGATGTGGTCCGACAGCACGTCTGCGTGGAAGCGCGTCCGCCGCTGCAGCATGCTGGCGAGCTGGAGCCAGGAAGCATTGCATGGGTCGAATCGGAACACCTGGAATCACAGCATGTGGGAGGCCCTGAGCAGAAGGCAGGCGCCCGGCTTTGCATCTCGCGCAGCTGCAGGAACTGATGCGAGTTTTCTCCAGGCTGGAGGAGAGCTGAGCAGCAGTGCCTCTGCTGGAGCTGACACCCTGCAGCCCTGCGTGTGCCCTGAGCGAGCTCACGTGAGGCACTGCTGCTGGGAACGGGCTGCGCTTCCTACCTGCAGCGAGCAGGAGCTGGAACACGTTGGTTTGATGGAAGAATGTTAAGCTATGAATGCCAGTTGGCACACGTCTACTGAAAGCTGTTTTTTGCACCTCTGCTTCTGCTTTTATGTGCGGTGAGGAGGGTAGCTGAGCTTTTGCATCTTACCCAGCCTTAAACAAGCCCCTGAGCTCTGTTCTGCTTGTCCTGATTAGCAAGCACAGCTCACAGAAGGAGGGTCCCGGCTGCAGAACCGCGTGCTGTCGGAGCTGTGCGTGGGCTCTGTCCCTATGTGTGTGTGCCTCTGCTGCTGAGCTGCCTCCTGCCTTCACAGCAGGGAAGGAAATGCTGCTTGCAGCTGCTGAGCTGAGTGCAGGAGGCTTCAGTTTGTGCCTCCCGGTGTCAGTGCTGCCACAGCAGGGTAACATTTGTGTGGTTGCTTGGTGGACTGCTGAGGCGGCTGAGCCCATGACGGCTCTGTATGGATTAGTGGGACAGCTTACAGTGGGAGCAGATGAGATGGGGCAGGAACTGGCCGCTTTCCAGAGTTTGAAACCTGTGCTTCCAGGGGCTGCTAATACTGCACAGGGCTCTAGAAGGCAGTGTGAGCAGCAGTGTGCCCTGCAGCCCAAAAGGCCAACCATGCCCTGGGGTGCACCAGTCTGAGCACTGCCACCAGGAGAGGGAAGGGCTGTCCTGCTGTGCTCTCCAGGGACAGCGGCAGGGCCAAGGGAACGGCACGGAGTTGTCAGGGGAGGCTCAGGTGGGGTTGGGGAATGGCTGTGCCCCATAGGGCTGGGCACGGCCCCGAGCTGGCAGAGCTCAGGGAGCTCTGGGACACCGCTCTCAGCCGTAGGGTTGGGGGTTGGGTGGTGCTGTGCGGGGCCGGGTTGGGCTCGGCGATCCCTGAAAGTCTGTTCCAGTTCAGGATGTTCTGTGGTTGCAGGATTCTAACATGGAAAGGTGGGAAACTGACAGTAAGTAGCAGAGTGATCCCCTTCCTCCCCTGCCCCTTTCCAAGGCTAAAGGTTTCTTGGCTTACCTCATTTGACGGCTGCTTTCCTGTGGGATCAAACGTGCTCTGCCCCCCCAAGACAAAGAGGAAGTCTTCGATGACAACTATGCAGTGGTTGTACAGGGGCACGCAGAGGTCCCCAACTTTGCGCCAGGTGCCGCAGCTCTGCTCTGCAGCCCACATCTCTCTGCAGATGCTGTTGGTGGTGGTTCTGCCGCCAGCGATGAGCAGCGCAGGGGAAGTGGAGCAGAGGGCGGTGTGTGGGGTCTGCCGGGGCCGCTGTGTGCAGAGCTGGGGGTGGTGGGTCAGGGCGTCCTGGAGGAGCCGGCGGCAGCCCCAGTCCAGCCTCGTCAAAGGGATTTCCTGGGCGTAGCGCTGCAGCTCACGGAAAGGGACGAGAGGGAATCCGATGCGCTTTAAAATGTCCCCCATGTATTTCAGCCGTGTGCGGTCGTGCTGCAGCCAGCTCACAGCAGCTCTGAGCAGCTCCAGCTCACCGCTTCCCTCTGCGGTGGTCCTGTCTAAGATTTCACAGAGGGTTCCTCTGTCCACATCCTTCAGGCTCTGAGGGTCGGCCAGGAGCTGTTTGTAATGCTGCCTTACGCAGCTCATGGCCTTCTCTCTCAGCTCCGCGGGGCCAAGTTTTTTGGCAATGCGTAGAACGTCCACGCAGTTCTCACTGCTCAAGCAGCTCTCCAGAAATCGGAAACACAGCTTGATCACCTCTCCAACCAGCAGGGCTTCTGCAGCCTTGAATGTCTCCTCAACGTTCTGTAACGAGAGATCTAATTTGTTGGAATAAATGAAGCTGAGGACGTTGCTCAGCCCCGCGGCACTGACAGCATTCAGATGGACGCTTCCGTCCGTGCTCCCGGTCCTTGTCGCATTCCCAACAAATAGAATCTTGCAGTAATTACTTGCTGATGCTAAAATGATCTTGTGCGCTGGAAAGCAAACCCCTTCTGCCTCCAGTGTTACATCACACAGTGCTTTCTGGGTGCGAAGCCTGCTGATGCCTTCCAGAAGTTTCTCCAGGTAGGTGTCAGACCCAAGGCTCCCCATGCTGCTCTGCAAGCCAGCAGCATTGCTCTAAAAGCACGTAGGCCAGGAGCAGCCCCAGGTCTGCTGGTTCATGCTCCAGGACAGCCGAGGCGGTGCTGCCCGCACACAAACTCCCCCGGAGCGCTGCGTACTGCATGGTGGCTGTGGGTCCTTTGGCTTTGGCAGTGGTAGGCGGCCACTGGTGTAACTGCATTCCTGCCCTGCTGTCCGGGCAGCGCTGCACAAAGCAGGCTGTTCCTCCAGCCCTCCCCAGCAGTGCTTTGCTGGGCAGGTGCTCTTTCATCGGGGCAAGCCTGCACATGTCGGCCTTTCCTTTTTGAACAACAGTCAAACAGAATCCTGCGTAGGATGCGCTCCCCCACGTTGGCCCTCATGTTCAATTTGATGCGTTCGCACAACAGCGATTTTCAGGGAGGGGGTGGGGGGGTCGCAGCAGTTTCACCCATCTCAGATGGGTCCTGGGACGATTCCCATGCACAGTGCTGGGAAGTTGGGCTGGAGGTGCAGGGGCTGACGAGTGGGTCACAGCTTCTGCGATGAGCAGAGCCCCTGGGAGCTCATGGCAGAGTGGGGTGTAATACACAGGCAGCAGTGAGGTGTAAAGCTGTGACCACAACCTACAGCTGGCACCTTGCTCTGGGCCTGCCACAGCCCTGGCCCCCCCGGCTGGTCCCGGCCTGCACAGAACCTGTGGATGAATCAGCAGAGTGTACCACACCGATGGGTATGTTTGTGCTCTTCCCACTTGGCAG
Seq C2 exon
GCGTGTTCTACAACTCCTCTGGCTCAGCGCAGTGCTATGATGTGTACCGACTGTACCGGCCCTGCGCCGACCCCACGGGCTGCGGCACCGGCGCGGATGCTGAGGCCTGGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105:ENSGALT00000014829:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
NA
C2:
PF055777=Peptidase_S28=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]