MmuEX0043235 @ mm9
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65188095-65193446:-
Coord C1 exon
chr2:65193381-65193446
Coord A exon
chr2:65191820-65191926
Coord C2 exon
chr2:65188095-65188174
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAATATTTACTATATTTTAGTTG
3' ss Score
5.86
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAG
Seq A exon
TTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGGTTACATGTACTCTGCCATTGTCACTGTACCGAGATATAGCAAAGCTTGGAAAG
Seq C2 exon
ATCTCTTTCATCTCTACAATTTTAACAACTGTAATTCTTGGAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'7-8,'7-7,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(12.6=100)
A:
PF0149013=Aa_trans=PD(3.1=8.3),PF0149013=Aa_trans=FE(12.3=100)
C2:
PF0149013=Aa_trans=PD(14.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAATAACTGGAGATACTTTGAGC
R:
TGTTTGGTCCCAAGGAAATGGC
Band lengths:
130-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: