DreEX0072765 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50303145-50327006:+
Coord C1 exon
chr9:50303145-50323125
Coord A exon
chr9:50324318-50324424
Coord C2 exon
chr9:50326927-50327006
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTTTTGTTTTCAGTTG
3' ss Score
8.83
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
Exon sequences
Seq C1 exon
CCAAAAAATCTCTAAAATATAATTAAATTAATTAAATTTAATGTTGCATGAAGAAACAACCTCATCTTCAATTCAGACTCTGTGAATGTCTAGTTTTCCCTCATCACTGTGGAGTTTTTCATCAGTGTTTTAGTTTTTGACTAAAGTAAACGGTATATATTTAATGCTTAAAGTACCTGCATTTAACACGTAAATGTTTTTGGTCTTTTACCAGATTACTCCATCATTCTTCTGGTCAGAGGAGGAAATCTGTCCGGCACCCACAGTTACCAATCTCTGGTTCGAAGCACATTTGGCCAGATAGGTTACATCATCGTGTCGGTTCTACAGTTTCTTTATCCATTCATTGGTAATTAACATCTCCTTTCTGTCCTAAAAATGACCTTTAGTTGCATTTGTGTGAATATTTGTTGCATTTCTGATCCCACATGCAGCAATGATCAGCTACAACATCATCGCAGGAGATACACTTACTAAAGTATTCATGAGAATTCCAGGTG
Seq A exon
TTGGTCCTGGAAACATTCTCACAGAGAGGCATTTTGTAATCGCGATGTCTACTGTTCTGTTCACACTGCCATTGTCTCTCTACAGAGATATAGCAAAGCTGGGAAAG
Seq C2 exon
GTGTCTTTATTGTCTATGATTTTGACTTTTGGCATCCTCATGACAGTGGTCGTGAGAGCAGCAACGCTGGGACCGCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PD(17.7=87.0)
A:
PF0149013=Aa_trans=FE(9.0=100)
C2:
PF0149013=Aa_trans=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTACATCATCGTGTCGGT
R:
GCTCTCACGACCACTGTCATG
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]