HsaEX6016326 @ hg19
Exon Skipping
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]
Coordinates
chr2:165793860-165801144:-
Coord C1 exon
chr2:165801079-165801144
Coord A exon
chr2:165795960-165796066
Coord C2 exon
chr2:165793860-165793939
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAATATTTATTGTGTTTTAGTTG
3' ss Score
7.77
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CAATGATAAGTTACAATATAATAGCTGGAGATACTTTGAGCAAAGTTTTTCAAAGAATCCCAGGAG
Seq A exon
TTGATCCTGAAAACGTGTTTATTGGTCGCCACTTCATTATTGGACTTTCCACAGTTACCTTTACTCTGCCTTTATCCTTGTACCGAAATATAGCAAAGCTTGGAAAG
Seq C2 exon
GTCTCCCTCATCTCTACAGGTTTAACAACTCTGATTCTTGGAATTGTAATGGCAAGGGCAATTTCACTGGGTCCACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507-'5-9,'5-6,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.0=100)
A:
PF0149013=Aa_trans=FE(10.2=100)
C2:
PF0149013=Aa_trans=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAATAGCTGGAGATACTTTGAGCA
R:
ATGTGTGGACCCAGTGAAATTGC
Band lengths:
130-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)