RnoEX6017108 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51404609-51409197:-
Coord C1 exon
chr3:51409132-51409197
Coord A exon
chr3:51407800-51407906
Coord C2 exon
chr3:51404609-51404688
Length
107 bp
Sequences
Splice sites
3' ss Seq
TAATATTTACTACATTTTAGTTG
3' ss Score
4.3
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
CTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCGGGAG
Seq A exon
TTGATCCTGGAAGTTGGTTTATTAGTCGACATTTCATTATTGTGGTTTCAACGGTTACATGTACTCTGCCTTTGTCGCTGTACCGTGATATAGCAAAGCTTGGAAAG
Seq C2 exon
ATCTCCTTCATCTCTACGATTTTAACAGCTGTGATTCTTGGAGTGGTAGTGACAAGAACCATTTCCTTGGGGCCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'4-8,'4-6,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(18.3=100)
A:
PF0149013=Aa_trans=FE(13.2=100)
C2:
PF0149013=Aa_trans=FE(6.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAATAACTGGAGATACTTTGAGC
R:
TGTTTGGCCCCAAGGAAATGG
Band lengths:
130-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]