GgaEX6042542 @ galGal3
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
NA
Coordinates
chr7:21486079-21488894:+
Coord C1 exon
chr7:21486079-21486144
Coord A exon
chr7:21488213-21488319
Coord C2 exon
chr7:21488815-21488894
Length
107 bp
Sequences
Splice sites
3' ss Seq
TACTTGCTTCTTTGTTTCAGTTG
3' ss Score
8.3
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTATGATTAGTTACAACATAATAACTGGAGACACTTTAACTAAAGTGTTCCTGAGAATTCCTGGAG
Seq A exon
TTGGATCAGAAAATGTGCTTACTGATCGTCGCTTCATAATTCTTTTTACCACCATCATCTTTACCTTGCCTTTATCTTTATATCGTGACATAGCAAGATTGGGAAAG
Seq C2 exon
GTATCGCTTGTTTCTCTGCTTTTAACTGTTGTCATCCTGTTTATTGTGATGGTGAGGACAGTAACACTTGGTCCACAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'3-5,'3-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(5.7=100)
A:
PF0149013=Aa_trans=FE(9.0=100)
C2:
PF0149013=Aa_trans=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTACAACATAATAACTGGAGACAC
R:
ACCTGTGGACCAAGTGTTACTG
Band lengths:
138-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]