MmuEX0003287 @ mm9
Exon Skipping
Gene
ENSMUSG00000026842 | Abl1
Description
c-abl oncogene 1, non-receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:87859]
Coordinates
chr2:31544815-31634027:+
Coord C1 exon
chr2:31544815-31545462
Coord A exon
chr2:31546075-31546279
Coord C2 exon
chr2:31633854-31634027
Length
205 bp
Sequences
Splice sites
3' ss Seq
TATATGTAACTACACTGCAGCTG
3' ss Score
3.37
5' ss Seq
TAGGTGGGC
5' ss Score
5.26
Exon sequences
Seq C1 exon
GACTTTCAGTGCCGTTGGCCCTTTTCTGACTTTTCTGTGAATAGTTTTATCTAAAGTTCCCCTCTTGCAAAGAAAGTGTTCCTCAGCTCGCAACGTAGACTTAGATTGAAGAAACTTTTGGCATTGCGGTTACATGACTTCAAACTAATTACCCTGGAAAAGAATTCCAGGCTCCTGTTTACATGTGTGAACCTCAAACCCAGCTTCCCTTTGTCATGGAAGTTGTCTGTCTGTGATTGACCCAAGTTACTGACCCAAGACGGTGGTGTGAAGTTCTGGGTATATACTGTTGCCTGCTAACCCCCACGGACCATTCTGAAAAGTCTTGAACCCTCTTCTGGAAAGGGGCACCTATTATTGCTTTATGGGGCAGCAGCCTGGAAAAGTTCTTGGGGACCAAAGAAGGCCTAGTTTGCCCGCCCTGCATTTTATCAAAGGGGCAGGGAAGAGGGACTCATCGAGGCATGGGGGCCCACACTGCAATGTCTTTGTGGAACACG
Seq A exon
CTGTCTTCAGACACCCCAGAAGAGGGCATCAGGTCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCGGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTCGGTGCTCTCAACCTCTGAGCCATCTCTCCAGCCTCCGACATGATATCTTTTGACCTTCTCAGTGATGAGCTGCACTTGAAACTTCTCGTTTTGGATGTAG
Seq C2 exon
AAGCCCTGCAGAGGCCAGTGGCATCTGACTTTGAGCCCCAGGGTCTCAGCGAAGCAGCTCGATGGAACTCCAAGGAAAACCTTCTTGCTGGGCCCAGTGAAAATGACCCCAACCTTTTTGTGGCACTCTATGATTTTGTGGCCAGTGGAGATAACACTCTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026842_MULTIEX1-1/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=0.030 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(38.3=30.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTGACCCAAGACGGTGGT
R:
CTGGGGCTCAAAGTCAGATGC
Band lengths:
295-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: