MmuEX0003287 @ mm10
Exon Skipping
Gene
ENSMUSG00000026842 | Abl1
Description
c-abl oncogene 1, non-receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:87859]
Coordinates
chr2:31688551-31778507:+
Coord C1 exon
chr2:31688551-31689942
Coord A exon
chr2:31690555-31690755
Coord C2 exon
chr2:31778334-31778507
Length
201 bp
Sequences
Splice sites
3' ss Seq
TATATGTAACTACACTGCAGCTG
3' ss Score
3.37
5' ss Seq
GATGTAGGT
5' ss Score
4.9
Exon sequences
Seq C1 exon
GACTTTCAGTGCCGTTGGCCCTTTTCTGACTTTTCTGTGAATAGTTTTATCTAAAGTTCCCCTCTTGCAAAGAAAGTGTTCCTCAGCTCGCAACGTAGACTTAGATTGAAGAAACTTTTGGCATTGCGGTTACATGACTTCAAACTAATTACCCTGGAAAAGAATTCCAGGCTCCTGTTTACATGTGTGAACCTCAAACCCAGCTTCCCTTTGTCATGGAAGTTGTCTGTCTGTGATTGACCCAAGTTACTGACCCAAGACGGTGGTGTGAAGTTCTGGGTATATACTGTTGCCTGCTAACCCCCACGGACCATTCTGAAAAGTCTTGAACCCTCTTCTGGAAAGGGGCACCTATTATTGCTTTATGGGGCAGCAGCCTGGAAAAGTTCTTGGGGACCAAAGAAGGCCTAGTTTGCCCGCCCTGCATTTTATCAAAGGGGCAGGGAAGAGGGACTCATCGAGGCATGGGGGCCCACACTGCAATGTCTTTGTGGAACACG
Seq A exon
CTGTCTTCAGACACCCCAGAAGAGGGCATCAGGTCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCGGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTCGGTGCTCTCAACCTCTGAGCCATCTCTCCAGCCTCCGACATGATATCTTTTGACCTTCTCAGTGATGAGCTGCACTTGAAACTTCTCGTTTTGGAT
Seq C2 exon
AAGCCCTGCAGAGGCCAGTGGCATCTGACTTTGAGCCCCAGGGTCTCAGCGAAGCAGCTCGATGGAACTCCAAGGAAAACCTTCTTGCTGGGCCCAGTGAAAATGACCCCAACCTTTTTGTGGCACTCTATGATTTTGTGGCCAGTGGAGATAACACTCTCAGCATCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026842_MULTIEX1-1/4=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=0.038 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001823=SH3_1=PU(38.3=30.5)
Main Inclusion Isoform:
ENSMUST00000075759fB268
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTGACCCAAGACGGTGGT
R:
CTGGGGCTCAAAGTCAGATGC
Band lengths:
295-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types