MmuEX0021408 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38871674-38874009:-
Coord C1 exon
chr2:38873859-38874009
Coord A exon
chr2:38873259-38873401
Coord C2 exon
chr2:38871674-38872462
Length
143 bp
Sequences
Splice sites
3' ss Seq
GAGATGTGTCCATCTCATAGGTT
3' ss Score
6.54
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ATGTCTTGGTTTGGATCCAAACCAACTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGAGCCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGG
Seq A exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGAATGATCTCTCCGTATAGCACCAAATACACTCAATTGCCTTCTTAATGAATGTACTCGTCTTGGATGGGTTGCTG
Seq C2 exon
GTAAGAAACCCCAGAGGACTGAACAGTCCACAGCCCTCCAGAAGCAGCTGCAGTTCCAGCTTTGGAAGCCCTTTCTACACCTTAGGTTTCTCAGGCCTTTGAGCTGGTATGTCCGTCTGTCTATCTGTCTCTCTCACACTCGAGCACACAGACACCCCTGCCTGCAGGTTGTGTTGTGGCTGTGGGGCCCACTCGTTTAGAATGGCTTTCCTGCTGCATGTTGAGCTCCTCCAGCACTAGGAGAGTGCAGTAGCTATTCCAAGTGGCTTCATGCACTTTACTTCCATAAACTTTATAAGAGACAGTGTGTAGCCCTTTATAGATGAGCACTGGACTGTGATCTTACTACCAATGTAAATAGGGATAGTATTATCTAAAAACTGCTGTAGCAGAATTATTTGTGGTGCAATACTTTTTGATTAAAGCTCTTCAAGATGCAACTACAGTGAGTTTTACTTGATAAAGCTCAAGGTATGTTTATTTTGATGTGTCAAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATGGGCTGACACTCT
R:
CATTCTAAACGAGTGGGCCCC
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types