MmuEX0021408 @ mm10
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39015779-39018489:-
Coord C1 exon
chr2:39018339-39018489
Coord A exon
chr2:39017739-39017881
Coord C2 exon
chr2:39015779-39016942
Length
143 bp
Sequences
Splice sites
3' ss Seq
GAGATGTGTCCATCTCATAGGTT
3' ss Score
6.54
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
ATGTCTTGGTTTGGATCCAAACCAACTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGAGCCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGG
Seq A exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGAATGATCTCTCCGTATAGCACCAAATACACTCAATTGCCTTCTTAATGAATGTACTCGTCTTGGATGGGTTGCTG
Seq C2 exon
GTAAGAAACCCCAGAGGACTGAACAGTCCACAGCCCTCCAGAAGCAGCTGCAGTTCCAGCTTTGGAAGCCCTTTCTACACCTTAGGTTTCTCAGGCCTTTGAGCTGGTATGTCCGTCTGTCTATCTGTCTCTCTCACACTCGAGCACACAGACACCCCTGCCTGCAGGTTGTGTTGTGGCTGTGGGGCCCACTCGTTTAGAATGGCTTTCCTGCTGCATGTTGAGCTCCTCCAGCACTAGGAGAGTGCAGTAGCTATTCCAAGTGGCTTCATGCACTTTACTTCCATAAACTTTATAAGAGACAGTGTGTAGCCCTTTATAGATGAGCACTGGACTGTGATCTTACTACCAATGTAAATAGGGATAGTATTATCTAAAAACTGCTGTAGCAGAATTATTTGTGGTGCAATACTTTTTGATTAAAGCTCTTCAAGATGCAACTACAGTGAGTTTTACTTGATAAAGCTCAAGGTATGTTTATTTTGATGTGTCAAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATGGGCTGACACTCT
R:
CATTCTAAACGAGTGGGCCCC
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types