MmuALTA0008000-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39017813-39018406:-
Coord C1 exon
chr2:39018339-39018406
Coord A exon
chr2:39017882-39017914
Coord C2 exon
chr2:39017813-39017881
Length
33 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
ATTACACTTTGTTTCCCCAGCCA
3' ss Score
7.23
Exon sequences
Seq C1 exon
CCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGG
Seq A exon
CCACCTAGAACTTGAGATGTGTCCATCTCATAG
Seq C2 exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-33-46,33-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATGGGCTGACACTCT
R:
TCCGTCTGCTTGCTAGTTTTCT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types