MmuALTA0008000-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39017813-39018406:-
Coord C1 exon
chr2:39018339-39018406
Coord A exon
NA
Coord C2 exon
chr2:39017813-39017881
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
GAGATGTGTCCATCTCATAGGTT
3' ss Score
6.54
Exon sequences
Seq C1 exon
CCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGG
Seq A exon
NA
Seq C2 exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-33-46,33-45-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACATGGGCTGACACTCT
R:
TCCGTCTGCTTGCTAGTTTTCT
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types