RnoALTA0016832-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23310995-23311728:-
Coord C1 exon
chr3:23311578-23311728
Coord A exon
NA
Coord C2 exon
chr3:23310995-23311137
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
GAGATGTGTCCATCTCATAGGTT
3' ss Score
6.54
Exon sequences
Seq C1 exon
ATGTCTTGGTTTGGATCCAAACCAGCTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGACCCACCCAAGGATAGAGCTACGTGGGCTGACACTCTTCCTATGAAAAGAATACTGACACAGCAGACTGG
Seq A exon
NA
Seq C2 exon
GTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGAATGATCTCTACGTATAGCACCAAATACACTCAATTGCCTTCTTAATGAATGTACTCGTCTTGGATGGGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493-29-34,29-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGCTGACACTCTTCCTA
R:
AGATCATTCCGTCTGCTTGCT
Band lengths:
125-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]