MmuEX0039247 @ mm9
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37270036-37278423:-
Coord C1 exon
chr2:37278287-37278423
Coord A exon
chr2:37274952-37274987
Coord C2 exon
chr2:37270036-37270332
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTGCAGTAC
3' ss Score
9.65
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GTAGCTCCCGATGGAGTTTGAGGCCCTGAAACCGCCGCCGAGCTCTGCCCCGGCGAGACGAGGCGCCTCCGTCGCCGAGCCGCGCCGTCGCGGGGCCCCCGGGAGCGGCCCTTAGCGACCCCGCCCGGGCCCCTCAG
Seq A exon
TACCGGGGATTGAATTTAAAGCTTCACAAACATTAG
Seq C2 exon
CTTAAAAAACACTACACATCAAAATAATGATCTGCTAGACTGCTAACCCGAGCATCAGCTTCCACAATGCCTGTGCAGGCAGCTCAATGGACAGAGTTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACAGTTTGCAAGACCTGCTTGAATAAACTTCACCGAAAAGCGTGTCCTTTTGACCAGACTGCCATAAACACAGACATTGATGTGCTCCCTGTCAACTTTGCACTTCTTCAGTTAGTTGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF146341=zf-RING_5=WD(100=55.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCCCTTAGCGACC
R:
GTCCATTGAGCTGCCTGCAC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types