MmuEX0039247 @ mm10
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37414516-37422903:-
Coord C1 exon
chr2:37422767-37422903
Coord A exon
chr2:37419432-37419467
Coord C2 exon
chr2:37414516-37414812
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTGCAGTAC
3' ss Score
9.65
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GTAGCTCCCGATGGAGTTTGAGGCCCTGAAACCGCCGCCGAGCTCTGCCCCGGCGAGACGAGGCGCCTCCGTCGCCGAGCCGCGCCGTCGCGGGGCCCCCGGGAGCGGCCCTTAGCGACCCCGCCCGGGCCCCTCAG
Seq A exon
TACCGGGGATTGAATTTAAAGCTTCACAAACATTAG
Seq C2 exon
CTTAAAAAACACTACACATCAAAATAATGATCTGCTAGACTGCTAACCCGAGCATCAGCTTCCACAATGCCTGTGCAGGCAGCTCAATGGACAGAGTTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACAGTTTGCAAGACCTGCTTGAATAAACTTCACCGAAAAGCGTGTCCTTTTGACCAGACTGCCATAAACACAGACATTGATGTGCTCCCTGTCAACTTTGCACTTCTTCAGTTAGTTGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF146341=zf-RING_5=WD(100=55.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCCCTTAGCGACC
R:
GTCCATTGAGCTGCCTGCAC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types