RnoEX0074844 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21669848-21676691:-
Coord C1 exon
chr3:21676591-21676691
Coord A exon
chr3:21673172-21673207
Coord C2 exon
chr3:21669848-21669948
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTGCAGTAC
3' ss Score
9.65
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GCCGAGCTCTGCCCCGGCGAGACGAGGCGCCTCCGTCGCCGAGCCGCGCCGTCGCGGGGCCCCCGGGAGCGGCCCTTAGCGACCCCGCCCGGGCCCCTCAG
Seq A exon
TACCGGGGATTGAATTTAAAGCTTCACAAACATTAG
Seq C2 exon
CTTAAAAAACACTACACAGCAAAATAATGATCTGCTAGTCTGCTAACCCGAGCATCAGCTTCCACAATGCCTGTGCAGGCCGCTCAATGGACAGAGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGCCCTTAGCGACC
R:
GTCCATTGAGCGGCCTGC
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]