MmuINT1029703 @ mm10
Intron Retention
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37414516-37419467:-
Coord C1 exon
chr2:37419432-37419467
Coord A exon
chr2:37414813-37419431
Coord C2 exon
chr2:37414516-37414812
Length
4619 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
3' ss Seq
TTGCTTTTGTCCATTTGCAGCTT
3' ss Score
10.12
Exon sequences
Seq C1 exon
TACCGGGGATTGAATTTAAAGCTTCACAAACATTAG
Seq A exon
GCAAGTGTTCTACAACTGAGCTACATCCTTGAACAAAACTAATTACTTTGATATGTTCTATATGGGGAAGTGTCAGTGTAGTCCACTATAGTACTCAAATGTAAATAATGATTGTTTAACAACCAACCTCTAAGTGTATAAGTGTATAAACAGAATTATAAAATACTGTGTTACACTATTATGTTTTACACACAAAGTAGTGAAAAAGACATATGCTCTATTCTGACTTTTTAAAAGTGTCATGGTTCTGAACTGACTATGTAATACGAGTAACAGAAAATGAAAGTATTTTGCTAGTACACTGTTTATTTCGGTAAAGAAGTTTGTAATTTACATCTATAAAACAAGTCTGTTACTCTTTGTATATTATGAATTTGGACTTATATCAAGGAACTTATAGCTTGGGAGTCTGAGCCTGTTTAAGGTTCTGCCTCTACTTGAGTATTTCTCCTTCTGTGCTTTATCTTACGCCTTGTCAGTGTTAAAAACTAGGTACTGAAATTAGTTAATAGTGAGAATGTTTTCTCAATCTCTGTAGGCATCTAGATTTTTGGGCTTTTTAGTCTATTTTATCTCAACTTGAAACATGTGGGAAGTATATTTGGGATAAGTGCTTTGCTAGTCACTATAAATGTTAGCAGTTATGATGTCATATCTACTGAATCAAATAAGTTATTGTAAAATATGTTACTATAAGCCTAAAAGTTCTATAAATTAGTATACTGAGCTCTTGATTGTTTATTTATATGCTTTTAAAACTATAAAAATAGTAAGAGGTTGGGCATATTAAAAAAATAGGAGGCTGGATGGTAGTGGTGCACACTTTTTAGCCCCAGTACTCAAGAAGCAGAGGCAGGAGTATCTCTGAGTTCAAGGCCACCGTAGTTTATGAGCTCCAGGACAACTAGGCTGTTAGAAAGAAACCCTGCTTCAAAAAAAAAATTTGGGGGGGATAATTGTAAAAGTATTTAGATAAACTCAAGAAGTACCTTTCAAATAGAGAGCTGAAACTCCTATGCCACCAATGAAATATTTTAATGGTTATGCATGTTTCTCTGTTTTGGATAAAATGTTCATTTTTTTATTTGCATAACTTAGAATTTATTGACCATAATACTAAAGGAAAGCATCTTTAGGAATCAAATCATATTGTGTAAAGAAAGTTTAGTAAGTTTACTATCAGAATCTGTGATATAGCAGGGGAAAAAAATTGACAGTGTGGTCAGTTTCATTTGAGCTATTCTTTACATTTTACAGGCATTTATTTAGTTTTTAATATGAATTAGTATTAAAAGCTCTTGTCTAGATAAATATATGTATGTGTGTATGTATGTGTGTGTGTATACACATATATTAAAGAACTGTCAGGTGCATCTGGAGCACTGTCCCAATAGTCTTGGAGAAATAAGGAAAAGGGTGTTAGTTCTTTGTTTGCTGTTACCAAGCAGTTTGTGAAACCCTAATGCAGTAGAGTCTGTGTTTCTACACAAATGTCTGTCTAGCAAAATACCAATTTATGTTATTAATTTGGCTTTCCAGTTGTAGATTTAAATGAAATTCATCTTTTGCCTGGATTTATAATTCTATAACCAGAAAATAGAACATCAAATATGTTAGTTTCAAAAAGTATTTGCTCACTTGCTTATTGGCAATCTCTACACGTGGTAGTAGACTAACTGGTTTCAGATTGGTGGCTCTAATCAGTTTGAGGATAAAGTGTAAAAATTTATATCTTGACAAATTTGAGTTGCTTAGAAGTAAATATATTGATATTAATATATAATTTTTTCATTAAAGCTGTTTAGTAAAGATTTGTACATTATATGGGATACTTTTTTTGTATATTAAGACCTGTTTCAAGTTTACCAAGTAAATTTTAATTTTTTAAAAAAATTTTTAAAAAAGTCTTACTTTTTACTTTTTTGTAAAAAAAATTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCACAAGTGGTGGGATTAAAGGCGTGAGCCACCACGCCTGGCACTTTTTAATTTTTTAAGACAGATTTTCTCTATGTAGTCCTGGCTGTCCTGGAACTTGTTCTTGTGCAAGGCTGGTTTTGAATTCACATAAATGCCTGTGCCTCTGAGTGCTGAGATTAAAGGCATGTGCCACTACTGCTTGTCTTAAAAAAAAAAAAAAAGAGCCAGGCATGGTTGGGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTGAGTTCGAGGGCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCACGGCTACACAGAGAAACCCTGTCTGGAAAACCAAAAAGAAAAAAAGAAAAACTAAAACATTTCATTTGTCTCTTGGGGTTCTGGGGAGTGCTTACTGTTACATGTTTCTCTTTCCTGATGCTAACTACTCTTTCTGAGCATCTAGCATTCTGTATATCTAATGTATTTTGTAAGCATTTGTATGAAATAAAGTATTTGGTGGTTTAATTATCCTAAATACCTATATTTAATGTTTATCTGATGGCCTTTGTCATACTAATGTAAGTTTTGAATTGGAACATATTAAGGATGTGTGAGTTATAAGTAGTGTAGTTTCGATTGTGACTCTTGCTAGGCAATGGTGTTATACACCTTTAATCCTAGCACTTGGAAGGCAGAGGAGGTGGATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAAACCTGTTTCAGAAACAAACAAAAAACAAAACAAAAACAAAAAAAAGAAAGAAAGAAAAAAGAAAAGTCAAAAGAAACAAAGCAAAACAAAAACCCAAAAAGTAGATTGTGACTCTTGCTTGCTTTACTAAATGCTATACAATTACTAATCAAACAAGAAAATATGTAAAATGATTCTCTTATAGTTATTTTTCTGTGTTTGTACTATAATTCAGTGCAAAGATAAATATTTTATACCTTGTTTTCTGCTTAGAACTATTCCAAGAGAATAATGTTTTATTTTTCTAAGCCAACTCTATTGGGCCTGACAAGTTTTAAAAACACAGATACATACTTTTGTCAAAATTATTATGAACTATGACAAAAAATTCTAGGTAATTTTTTTTCCATTTTATTTTATAGAGGGGCGAGATGCATTGGAGCCATGCGCATGTTAACGGACAGCTTGTGAGAGTTTGTTCTCTCTTACCACAATGTTGGTCCCAGGGATGGAACTTGAGTTGCCAAGTTGAATTGTACATGCTTTTTTCTGTTGAGCTGTCTTACTGGCCATAGACAGTGTTTTCTTTGCTTTTGTCATTATTCTTTATTTTTTCAGTTATAGACAACATCCCTGTCATCACAGTCATCCGTAGATTTTCAGTAACTCACTAAGCTGAGGCACATCCTAATGTAGCATAGACTTCCTCCTTTAGATGCCAAGGTGACAGCTCACAAACAAATGTAGCACATTGTTTTGATGATTGTGGTGCTAGGAATTGAATCAGGGTCTCCTGCCTGCTGAGCAGACTGACAGAGCTACATCTCCATCCCTACAGTATTATTTTGATCAATAGTTTCTGAAGCTTAGCAGCTATTAAGACATATCAATATATTTTGAGGTAGTGGTTATCCAAAGAAAACACTTCAATCTTCAAACGGTCCAGTAATTTGTGTTCTTTGGTTTTCCCTTTTTTTTTATTTGTTTGTTTGTTTGCTTGCTTGTTTAGGTTTTTCTTTTTCCTTTTTCTTTTTTTAAAGATTTATTTATTTATAATATGTAAGTACACTGCAACTGTCTTCAGACACACCAGAAGCGGGCATCTGATGTCATTACGGATGGCTGTGAGCCACCATGTTGTTTTGCTGGGTTGAACTCAGTCCCTCCAGAGCAGTAGTCAGTGCTCTTAACCACTGAGCCATCTTTTCAGCTCTTGTTTAGGTTTTTCAAGACAGGGTTTCACTGTATAGCTTTGGCTGTCCTGGAACTCACTCTGTAGACATACTAACCTTGACCTGACAAAGATCCACCTACCTCTGCCTCCCAAGTGCTGGGGTTAAAGGCATGTGTGCCACCATGAACACATTGTTGGTGTTCTTAAGTAGAGAGTGGGAGGTAGGGGCTGTGAGATGTAAAGATGCTGCCAAGCTAGATGATCTGTGTGTCCTCAGACCCCACGTTAGAAGGAGAGAACTAACTAGCATGCACACATGGCACACATGGGCCCACATACATACACATAAACCCACACACAAAATAAAAACATTAAGCAATAAAAAATAGAATGTATTAGTCACTAAGAAAAATACACCAAAGTTTTGATTACTATTGCATGAACAAGCAGTAGAGTTTAGTTGAAAGGAATAGTATTAATAAATTGTCTCTGGGTAAATGTGCAAAATGTAATTCAACTTACAGTTTTGTTATTTATTGTTTGTTATAGAGACATCTAAATCCTATATTTAGAAATGTTTTAGATTCTGGAGTGGTGGTAGTTGATTTTAACAGTTAAGTGAATGACTAATAAATATATTGTTAATGCTTGCTTTTGTCCATTTGCAG
Seq C2 exon
CTTAAAAAACACTACACATCAAAATAATGATCTGCTAGACTGCTAACCCGAGCATCAGCTTCCACAATGCCTGTGCAGGCAGCTCAATGGACAGAGTTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACAGTTTGCAAGACCTGCTTGAATAAACTTCACCGAAAAGCGTGTCCTTTTGACCAGACTGCCATAAACACAGACATTGATGTGCTCCCTGTCAACTTTGCACTTCTTCAGTTAGTTGGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376:ENSMUST00000112934:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF146341=zf-RING_5=WD(100=55.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types