Special

MmuEX0001786 @ mm9

Exon Skipping

Gene
ENSMUSG00000048038 | 4932418E24Rik
Description
RIKEN cDNA 4932418E24 gene [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26136005-26143547:-
Coord C1 exon
chr2:26143455-26143547
Coord A exon
chr2:26137631-26137747
Coord C2 exon
chr2:26136005-26137143
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTTTCTATTTAAGATT
3' ss Score
10.68
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTCCAAGGACAAACTTCAAAAAGGTCAAAAATGCTTCTTGCAAAAGAGAGATCTCAAAGTCTTCTATCCTTCGCAGAACTGCCAAAGGCAGAG
Seq A exon
ATTCTGAGTTGGCTGGTGTGTACGCCTGGCGAAAAGGACAAGCCCTCGTGAGGCGGTTGCTTGGGCCCCCTGCTGCCCTCTCCCGGCTCCAGAGCAAGGTCCCTGACATGGAATTAG
Seq C2 exon
GCTCTGACAGGAAAGCAGCAGCTGTCAAGGCCTCACCTGCCCACACCTGGTTGTGTAAACCCATGTCTGCCCACAGTGACCAGCAGGTTTCCAAGCATACACCCAGCCTGGCTTTCCAGGATCAGTCAGCAACTATCCATGGTGCTATGGAGACCCTACAAGACCTGCGCCAACAAATCCAGGCTGGCCTGGAGCTTACCAGGAGCCCCAGAGTGGACAGGAAGCTCTCACTATCGAAACCAAAGCCACAGAACCTGGTAGGGAAGAGGGATCGGGGACTCCAAAGCACCCAGGACATGCAGGGCTCCTCAAAGACTGCTTGGACTGTGACAGAAGGAAAGAACTCTTCCTTGCACAGAGCTGGGAACTTGCACAGCCAGCAACACAGGAAGAAAGCCTTGGCTGAGCACGAGTCTTGTCCACGGAGGACCTGGACAGGACAGGGGCAAGACTCCTCTTTCCCCAGGCCTGGGAGCACCCCAGAAAAACCACGTTTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.738 A=0.275 C2=0.915
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000118110





     
                   









    
Main Skipping Isoform:
ENSMUSP00000054283





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:136292161-136292295 
HIGH PSI
HsaEX1007395
(CCDC187)
Human
(hg19)
No conservation detected
Rat
(rn6)
chr3:3734977-3735093 
ALTERNATIVE
RnoEX0017877
(Ccdc187)
Cow
(bosTau6)
chr11:103813421-103813499 
LOW PSI
BtaEX6047134
([1])
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAAGGACAAACTTCAAAAAGGTCA

				
R: 
GGGTCTCCATAGCACCATGGA

				
Band lengths: 
247-364

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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