BtaEX6047134 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDL7]
Coordinates
chr11:103811728-103818329:-
Coord C1 exon
chr11:103818234-103818329
Coord A exon
chr11:103813421-103813499
Coord C2 exon
chr11:103811728-103812890
Length
79 bp
Sequences
Splice sites
3' ss Seq
GGACAAGCCCTGGTGAGGGTGTG
3' ss Score
-33.52
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
CTGCACAGGAGAAAACCAAAAGGATGAAAAGTAATTCTTGCAAAACAGAGAAGGCACCCAAGCCGCCTGCCCCTAGGAGAGCTGCCAAAGACACAG
Seq A exon
GTGCTGGGGCCCCCGCCCGCCCTCCCCAGGCTCCAGAGCAAGATCCCCTCGAGAGACCAGGCCCCCGTCGCAGAATTAG
Seq C2 exon
ATCACGGGAAGAAGGTTGGAGCCACTGAGAGCTCCCCTGTCCACCCCCAGACGCCAAGTCCAGCCTCTGTCCACAGTGACCTGCAGATGCCCTCGGACAACGTGCCCACCCTGGCTTCCCGCGATCCACCCGTGAACGTCCAGGCTGCTATGGCCGTCCTTCGAGACCTCCGCCAGCAAATCCAGGCCGGGCTGGAGCTGGCCCGGACTCGCCACACGAGCCGAGGACTGGAGCTGCATGGCCTGGCAGGGAGGAGGCGGCCAGGCCCCTGGAAACCCCCAGACGTCAGGGGTGCCTTCTGGAAGAGCCCTGGGGCCCCGACGGACAGGCTGCCCACCTCTGAGAGGGCTGGGAGCCTCCCTGCTGCACAGCGCTGGAGCCCTGTGGCCGGGTGGGAGTCCTATCCACACAGGACCTGGGTGGCCCCAGGACGGGACACCTCCTTCCAGAGATGCGTGAGCCCCACCGAAGGGCCGAACTCCTTCCCGCAGCGGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023064-'5-12,'5-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGCTGCCAAAGACACAG
R:
CATAGCAGCCTGGACGTTCAC
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]