MmuEX0001786 @ mm10
Exon Skipping
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26280485-26288027:-
Coord C1 exon
chr2:26287935-26288027
Coord A exon
chr2:26282111-26282227
Coord C2 exon
chr2:26280485-26281623
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTTTCTATTTAAGATT
3' ss Score
10.68
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTCCAAGGACAAACTTCAAAAAGGTCAAAAATGCTTCTTGCAAAAGAGAGATCTCAAAGTCTTCTATCCTTCGCAGAACTGCCAAAGGCAGAG
Seq A exon
ATTCTGAGTTGGCTGGTGTGTACGCCTGGCGAAAAGGACAAGCCCTCGTGAGGCGGTTGCTTGGGCCCCCTGCTGCCCTCTCCCGGCTCCAGAGCAAGGTCCCTGACATGGAATTAG
Seq C2 exon
GCTCTGACAGGAAAGCAGCAGCTGTCAAGGCCTCACCTGCCCACACCTGGTTGTGTAAACCCATGTCTGCCCACAGTGACCAGCAGGTTTCCAAGCATACACCCAGCCTGGCTTTCCAGGATCAGTCAGCAACTATCCATGGTGCTATGGAGACCCTACAAGACCTGCGCCAACAAATCCAGGCTGGCCTGGAGCTTACCAGGAGCCCCAGAGTGGACAGGAAGCTCTCACTATCGAAACCAAAGCCACAGAACCTGGTAGGGAAGAGGGATCGGGGACTCCAAAGCACCCAGGACATGCAGGGCTCCTCAAAGACTGCTTGGACTGTGACAGAAGGAAAGAACTCTTCCTTGCACAGAGCTGGGAACTTGCACAGCCAGCAACACAGGAAGAAAGCCTTGGCTGAGCACGAGTCTTGTCCACGGAGGACCTGGACAGGACAGGGGCAAGACTCCTCTTTCCCCAGGCCTGGGAGCACCCCAGAAAAACCACGTTTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.275 C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACAAACTTCAAAAAGGTCA
R:
GGGTCTCCATAGCACCATGGA
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types