HsaEX1007395 @ hg38
Exon Skipping
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136290486-136297821:-
Coord C1 exon
chr9:136297714-136297821
Coord A exon
chr9:136292161-136292295
Coord C2 exon
chr9:136290486-136291645
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTATGTTTTCTCTGTTTAAGATT
3' ss Score
9.08
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
TTCTGAGGGAAAAACCCAAAAGGGTCAAAAGCAGTTCTTGCAAAAGAGAGAAGACCCCCAAGTTGCCCTCCCCTAGAAGAGCGGCCAAAGACAAACACAAAGACGAAG
Seq A exon
ATTCGGAGCTGGTTGGTGTTTACGCCTGGAGAAAGGGACAAGCTCTGGTGAGGTCGCTGCTTGGGCCCCCTCCCGTCCTCCGCAGGCACCATAGCAAGGATCCCTCGAGAGACCCGGCTCTCACCGTGGACTTAG
Seq C2 exon
GAGACAGCGAGAAAGTCATAGCTGCCAAGTGCTCACCGGTTTGTGCCCAGTTGCCCGATGCCACCTCCGCCTACAGTGACCAGCAGGTGTCTGGGAACACACCCAGCCTGGCTTCCTTCGACCAGCCAGCGACCATACAGACGGCCATGGCCATCCTACAAGACCTGCGCCAGCAAATCCAGGCTGGGCTGGAGCTGGCCCAGGCCCGCAAGGGAGGGCAAGAGCTCGGGCCATCAAAGCGGAGGCTGCAGGACGTGGCAGGGAGGGGCTGCTGCAGGGACCCCAATGCCCAGAGCTCCTTCTCTAAGAGTCCCTGGGCCATGACAGAGAGGAAGCATTCCTCTTTAGAGAGGGCTAGGAGTGTCCACACCTGGGAGCCCTGGAGCTCCTCCACTGCACGGGAGTCCTGTCCGCAGAGGGCCTGGGGGGCCCAAGGACAGGACCGCTCCTTCCAGAGGCCGGAGAGTCCCCATGAGAGGTTGGGCCACTTCTCCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220-'7-10,'7-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.674 C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAAGGGTCAAAAGCAGT
R:
GTCTTGTAGGATGGCCATGGC
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains