RnoEX0017877 @ rn6
Exon Skipping
Gene
ENSRNOG00000027392 | Ccdc187
Description
coiled-coil domain containing 187 [Source:RGD Symbol;Acc:1565512]
Coordinates
chr3:3733370-3740945:-
Coord C1 exon
chr3:3740853-3740945
Coord A exon
chr3:3734977-3735093
Coord C2 exon
chr3:3733370-3734499
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTTTTCTATTTAAGATT
3' ss Score
10.68
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ATTCAAGGACAAACATCAAAAAGGTCAAAAATATTTCTTGCAAAAGAGAGATCTCTAAGTCATCTATCCTTCGCAGAACTACCAAAGGCAGAG
Seq A exon
ATTCTGAGTTGGCTGGTGTGTACGCCTGGCGAAAAGGACAAGACCTTGTGAGGCGGTTGCTTGGGCCCCCTCCTACCTTCTCCCGGCTCCAGAGCAAGGCCCCTGCCACGGAATTAG
Seq C2 exon
GCTCTGACAGGAAAGCAGCAGCTGTTGGGGCCTCTGCTGCCCACACCTGGTTGTGTAAACCCACATCTGCCCACAATGACCAGCAGGTTTCCAAGCATACACCCAGCCTGGCTTTCCATGACCAGTCAACAACTATCCAAGGTGCCATGGAGACCCTGCAAGACCTGCGCCAGCAAATCCAGGCTGGTCTGGAGCTTGCCAGGAGCCCCAGAGCGGCCAGGAAGCTCTCGCCATCAAAACCAAAGCCACAGAACCTGGCAGGGAAGAGGCACCAGGGACCCCGAAGCACCCAGGACACCCAGGGCTCCTTCTCAAAGGCTGCTTGGACAGTTACAGAAGGGAAGCGCTTCTCCTTGGGCAGAGCTGGAAACTTGCACAGTCAACAACACTGGAAGAACACTTTGGCTGAGCAAGAGTCTTGTCCACAGAGGGCCTGGACAGCACAAGGCCAAGACACCTCTTTCCTGAGACCTGGGAGCACCCGGGGAAAACCAACCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027392_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=0.550 C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000036178fB2532
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGAACTACCAAAGGCAGA
R:
GAGAGCTTCCTGGCCGCTC
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]