MmuINT0178184 @ mm9
Intron Retention
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:29947925-29949155:-
Coord C1 exon
chr2:29948967-29949155
Coord A exon
chr2:29948062-29948966
Coord C2 exon
chr2:29947925-29948061
Length
905 bp
Sequences
Splice sites
5' ss Seq
CGCGTGGGT
5' ss Score
1.93
3' ss Seq
CTGTCCTCTGGCCTCCCCAGAGC
3' ss Score
9.56
Exon sequences
Seq C1 exon
ACCTTCTGCGCGCTTCTTCCGGGTGGGCTCGGGCGGGGGCCAAGGCCATGGCTCTTTGGCCGCCGCTTAACTCTGGGATGCTGGTGCGGACTGGGCACACCGTGCTGACCTGGGGAATCACTCTGGTGCTCTTCCTGCACGACACCGGTGAGCCGGACACCGCGCCACCCCGAGCCCACCCGATCACGC
Seq A exon
GTGGGTATACCGGGGTCCCCCTAATCCTCAGACACATTGAAATCTCCATTTCTATCTCCCACCAGTTCCTCAAGCGTCTTTCTCCTATGTCGGTCCGGGGATCATCCTCTCTCCGCCTGATTCCCAAGTTGGACCCTAATTAATCCCAGTAATTTTCTGTCATCGATAGATGTCCATCCATCCAAAGACCACCAGAGCCCATCAGAGGACCAACTAGAGGCCCCATCTCTCCCATCCCTGGGCTCTACCTGTCCTTCCCAGAAATTGCCTCCCAACCCCTCCCTAAATAAGATTAAGAAATCCGCTAGACTTAAGGACTTGGCTTTCCGGTCCACTCCCCAAATCCTATGAGCCGACTAACTACCCCAAGGGACGCCACTATAGCGAGGAGCAGGTTTCCCACCTTCGCCTGGTAGCATCTCCTTTCCCCATCATTCCCTTCACCCCCTTCCTGCCCCCTCCTAGGTTTCCCTTCCAGAAGGAACAGAGCCCACCAGAGGCTTCCTCTGTAGCCCTCCTCCATCGCTTTTGCCCTTTGTCCTCAGGCTTCCACACCAGGAGTCAGCCACCTTCAAAACCTCCTTGGCTCTCTTTCACCCAAGGGTACCAGAGTTGCCTACGCTCAGCTGTCTGGTGTCACCACGTCCATCACTTCTTAGCCCTCCCTCCTCTCCATAATCCTCCTTCACTGCCATGGGCTTAAACAGGCTGGCTGGCACCTTCCTAGCTGGAGCTCCTGGCTGGCTCCACCCTCTTCCAGGGCTGACTCTTCCCCTGGGGAGCCCCCTTCCTCCTGCCTCCCTCAGGTCTAGCCTCCATATCACCTCCAGCTACTTTCTTTCTACCCCCACCGCCTCCTGCCCTTCCCTTTTGCTATGGTTCTCACTGTCCTCTGGCCTCCCCAG
Seq C2 exon
AGCTACGCCAATGGGAAGAGCAAGGGGAGCTGCTCCTGCCCCTCACATTCCTGCTCCTGGTGCTAAGCTCCCTGCTGCTTTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTACTCAGCCCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-Zdhhc12:NM_025428:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.0=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGCGCGCTTCTTC
R:
CTGAGGCTGGGGCTGAGTAG
Band lengths:
326-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: