HsaINT0185121 @ hg19
Intron Retention
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:19159]
Coordinates
chr9:131484717-131486408:-
Coord C1 exon
chr9:131486273-131486408
Coord A exon
chr9:131484854-131486272
Coord C2 exon
chr9:131484717-131484853
Length
1419 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GTGCTCTCCGGCCTCTCCAGAGC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGGCGCTTCTTCCGGGTGGGGCCCCGGGCCGAGGCGATGGCGCCCTGGGCGCTCCTCAGCCCTGGGGTCCTGGTGCGGACCGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGATACCG
Seq A exon
GTGAGCCGGACCCCGAGCGACCCCGGACCCACCCGATCCCGCGTACTTCCCCAGACGTTCTGGTCACACTGGGTCTCCCGCCTAATCCCTGGAGATCCTGGGATTGGCCCGATCTCCACCAGCTCCTGAAGCCCTCTCCCCATCTATCATTCCAAGAGCCACCTGCTCTCTGTCTGATACCCCGTTGATCCCTAATTAATCCCAGCATCTTCCTGATCATTGCCAAATGCCCTGTCCATCCCAGGACCCAGCCGGTGCCCACCAGATCCAAGGACCGACTTGAGCCCCATGTCCCCTGATCCTGGGACCCACATGATCCTTCCCAGGAACTGACCCCAAATCTTCCTATCCATACGATTAGGAGGCTCAACTAGATGCAAAGATTGGCATTCTGCCCACACCCACACCCCCCACACCCCCATGGCCACTAGCTGCCCAAGTCCAGGCAAACCCTCAGGCCAGAGAACACTCCATGGGGTGCGGCCTGTCTCCCATCTTCCCACAGATTCACCCACCCACCCACCTCCATTTCCCTCATTCCTCTTAGTAGCCCCCTACCCAGCGCCTCACCTGCCACAGGCAGCCTCCCCCACTGTCCCCCACAGCAGACCCCAGCCCTCCTTCCATGGCGGTCCAGCCTCAGTTTCTGGACTGGGGCCCCTTCTGGCTTTCCTCCCAAGACAGACCTCCTCCACCACCTTCACCCTTTAGCCTAAAAACTTGCTCAGGTCTCCGTATCAGAAAACCCCCCTCAAAACCCACCCTTTCTTCTCTGCTCCCCCTTACAACCAAGGGACACAGGATTTGTCTACACTCTGCTGTCTGGTGGTCTCATGCCCCCTCACTCCTTGCCCTGCACCCTACCTCCCCAAAATCCTGTCACCTCCCTGGGCTGAAGCCTGCTGGACCCTTCCGTATGCCCCTCTGCAGCATCTGAGCCTGCCAGCTGCACCCTTCCCACTGTATCTCTCTCAGGCATTTCAGACCTAACCAGTCTCTCACCATTGCAGAGCCAGAGACGCTGGACCCCTCTTCCCTCTCTCCCACATCCAGTCAGGTCTGGCTCCCTTGACCCAGCAGCCCCCTGTCCATTCCTTCCTCCCTCACTTCCTGCCAGGCCTTTGTAGCGACTCTCTTCTTCCTCCTGGCCAGATTCTCTGCCCCCAGGCTTCCCCTGATCCATTTCTTTAGCAATGAGGTTTTCCAAAACAGATCTGGCTCTATAACCTTCCATGGTTCCCTCTGACCCTCCAGATAAAAGTGCAGATGAACTGCTGGCCACACACAGCCACTCATGGAACCAACATCTCCAGGCCTTTGCTCAGCCAGGAACACACTTCCCCACCTCCAACTGCACCCCAACCCCACCCACTCCTGTTCTACCCGGCCCAGCCTCACTGTGCTCTCCGGCCTCTCCAG
Seq C2 exon
AGCTGCGGCAATGGGAGGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTCCTGGTGCTGGGCTCCCTGCTGCTCTACCTCGCTGTGTCACTCATGGACCCTGGCTACGTGAATGTGCAGCCCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446-ZDHHC12:NM_032799:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(15.1=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTTCCGGGTGGGG
R:
GGGGCTGCACATTCACGTAG
Band lengths:
262-1681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)