GgaINT0125133 @ galGal4
Intron Retention
Gene
ENSGALG00000004664 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr17:5242496-5242997:-
Coord C1 exon
chr17:5242898-5242997
Coord A exon
chr17:5242633-5242897
Coord C2 exon
chr17:5242496-5242632
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTACGGGGATGATCTTTCAGATC
3' ss Score
6.59
Exon sequences
Seq C1 exon
CGGGCTCGCGGCGCCATGGGTGCCGGCGGGCTGTGGGTGAGGACCGCCCACACTGCCCTCAGCGGGGGCTTAACGCTGGGGCTCTTCCTGCACCGCACAG
Seq A exon
GTGAGGCAGAGCCCTCGTAGCGCCAGGCCGGGAGGGGTGCCGGTCCGGTCCGGTCCGGTCCGTGCTGTGCCTGCGGGGCGGCGGCGCTGCACCACGGCCTGCCCGGCCTCAGCGGGGTGCGGGGTGGCCCTGGGGGGGTCAGGCAGCTTTGGGGGCTCGGCACGCGTTGCGTGGCGGGAGGAGGGGTGCGGGGTGAGCCCGTTCTGTGACCGCTCGGGCTGTGCCAGGAATCACCGCGTTCTCTTTTACGGGGATGATCTTTCAG
Seq C2 exon
ATCTGCAGAAGGAAGCGGAGCGCGGTGCCGCGCTGCAGCCAACGCTCTTCGTAGCGCTGCTCGGGTGCTCCGTCCTGCTGTACTTCAGGGTGTCCCTCATGGACCCGGGCTTCGTTAGGGCTGAAGAGGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664:ENSGALT00000007431:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(12.9=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGTGGGTGAGGACC
R:
GCTTCCTCTTCAGCCCTAACG
Band lengths:
206-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]