HsaINT0185121 @ hg38
Intron Retention
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr9:128722438-128724109:-
Coord C1 exon
chr9:128723994-128724109
Coord A exon
chr9:128722740-128723993
Coord C2 exon
chr9:128722438-128722739
Length
1254 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGTTCCCTCTGACCCTCCAGATA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GCCCCGGGCCGAGGCGATGGCGCCCTGGGCGCTCCTCAGCCCTGGGGTCCTGGTGCGGACCGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGATACCG
Seq A exon
GTGAGCCGGACCCCGAGCGACCCCGGACCCACCCGATCCCGCGTACTTCCCCAGACGTTCTGGTCACACTGGGTCTCCCGCCTAATCCCTGGAGATCCTGGGATTGGCCCGATCTCCACCAGCTCCTGAAGCCCTCTCCCCATCTATCATTCCAAGAGCCACCTGCTCTCTGTCTGATACCCCGTTGATCCCTAATTAATCCCAGCATCTTCCTGATCATTGCCAAATGCCCTGTCCATCCCAGGACCCAGCCGGTGCCCACCAGATCCAAGGACCGACTTGAGCCCCATGTCCCCTGATCCTGGGACCCACATGATCCTTCCCAGGAACTGACCCCAAATCTTCCTATCCATACGATTAGGAGGCTCAACTAGATGCAAAGATTGGCATTCTGCCCACACCCACACCCCCCACACCCCCATGGCCACTAGCTGCCCAAGTCCAGGCAAACCCTCAGGCCAGAGAACACTCCATGGGGTGCGGCCTGTCTCCCATCTTCCCACAGATTCACCCACCCACCCACCTCCATTTCCCTCATTCCTCTTAGTAGCCCCCTACCCAGCGCCTCACCTGCCACAGGCAGCCTCCCCCACTGTCCCCCACAGCAGACCCCAGCCCTCCTTCCATGGCGGTCCAGCCTCAGTTTCTGGACTGGGGCCCCTTCTGGCTTTCCTCCCAAGACAGACCTCCTCCACCACCTTCACCCTTTAGCCTAAAAACTTGCTCAGGTCTCCGTATCAGAAAACCCCCCTCAAAACCCACCCTTTCTTCTCTGCTCCCCCTTACAACCAAGGGACACAGGATTTGTCTACACTCTGCTGTCTGGTGGTCTCATGCCCCCTCACTCCTTGCCCTGCACCCTACCTCCCCAAAATCCTGTCACCTCCCTGGGCTGAAGCCTGCTGGACCCTTCCGTATGCCCCTCTGCAGCATCTGAGCCTGCCAGCTGCACCCTTCCCACTGTATCTCTCTCAGGCATTTCAGACCTAACCAGTCTCTCACCATTGCAGAGCCAGAGACGCTGGACCCCTCTTCCCTCTCTCCCACATCCAGTCAGGTCTGGCTCCCTTGACCCAGCAGCCCCCTGTCCATTCCTTCCTCCCTCACTTCCTGCCAGGCCTTTGTAGCGACTCTCTTCTTCCTCCTGGCCAGATTCTCTGCCCCCAGGCTTCCCCTGATCCATTTCTTTAGCAATGAGGTTTTCCAAAACAGATCTGGCTCTATAACCTTCCATGGTTCCCTCTGACCCTCCAG
Seq C2 exon
ATAAAAGTGCAGATGAACTGCTGGCCACACACAGCCACTCATGGAACCAACATCTCCAGGCCTTTGCTCAGCCAGGAACACACTTCCCCACCTCCAACTGCACCCCAACCCCACCCACTCCTGTTCTACCCGGCCCAGCCTCACTGTGCTCTCCGGCCTCTCCAGAGCTGCGGCAATGGGAGGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTCCTGGTGCTGGGCTCCCTGCTGCTCTACCTCGCTGTGTCACTCATGGACCCTGGCTACGTGAATGTGCAGCCCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446:ENST00000406904:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.0=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGACCTGGGGAATCAC
R:
CTGGGGCTGCACATTCACGTA
Band lengths:
342-1596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains