RnoINT0167385 @ rn6
Intron Retention
Gene
ENSRNOG00000015791 | Zdhhc12
Description
zinc finger, DHHC-type containing 12 [Source:RGD Symbol;Acc:1306593]
Coordinates
chr3:8657908-8659102:-
Coord C1 exon
chr3:8658985-8659102
Coord A exon
chr3:8658045-8658984
Coord C2 exon
chr3:8657908-8658044
Length
940 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CTGTCCTCTGGCCTCCCCAGAGC
3' ss Score
9.56
Exon sequences
Seq C1 exon
CGGGCGGGGGCCGAGGCCATGGCTCTCTGGCCGCTGCTCAACTCTGGGATGCTGGTGCGAACTGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGACACCG
Seq A exon
GTGAGCCGGACACCGCGCCACCCCGAGCCCACCCGATCCCGCGTTTCCCCTCACGCGTGGGTCTCACCAGGTCCCCCTAATCCTCAGACACATTGAGATCTCCATTTCCATCTCCGCCAGTTCCTCAAGCGTCTTTCTCCATATGTCGGTCCAGGGGCCATCCTATCTCTGCCTGATTCCCAAATTGGTCCCTAATTAATCCCAGTAATCTCCTGTCACCGACAGATCCATCATCCAAAGACCACCAGAGCCCATCAATCCGAGGACCGACTAGGGGCCCCATCTCCCCCGACCCTGAGCACTATCTGTCCTTCCCAGAAACTGCCTCCCAACCTCTCCCTAAATAGGATTAAGAAATTGACTAGACTTAAGGATTTGGCTTTCTGGTCAGCTCCCCAAATCCTATGAAATGACTAAACTGCCCAAAAGAGCGCCACTATATCGGGGAGCAGGTCTCCAACCCCTGGTTGCATCTCCTTTCCCCATCATTTCCTGCAGCAGTCCCCGACCTGGGTCTCCCTTCCAGAAGCAGCAGAGCCCACCACTGAGGCTTCCTTCCTCTGCAGCCGTCCTTCATTGCTTTTTGCCCTTTGTCCTCAGGCTCCCACACCAGGAGTCAGCCACCTTCAAAACCTCCTCTGCTCTCTTTCAGCCAAGGGTTCTAGAGTTGTCTACACTCAGCTGTCTGGTGTCACCATGTCCCCTCACTTCTCAGCCCTCCCACCTCCCAGAATTGTCACACACTACTATGGGCTTAAACAGGCTGGGCCCTTCCTAGCCAGGGCTCCTGGCCCCACCCTCTTTGAGGACTGACTCTTCCCATGGGGAACCCCTTCTCCCCTTCCACACCCATCAGGCCTAGCCTCTCCATCCCCTCCAGCTACTTTCTCTCCCCTCCCTTCTCCTTGCTATGAGCCTCACTGTCCTCTGGCCTCCCCAG
Seq C2 exon
AGCTGCGTCAATGGGAAGAGCAAGGGGAACTGTTCCTGCCCCTCACTTTCCTGCTCCTGGTGCTGGGCTCGCTGCTGCTCTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTGCTCAGCCCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015791:ENSRNOT00000050908:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.0=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATGGCTCTCTGGC
R:
GAGGCTGGGGCTGAGCAG
Band lengths:
240-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]