BtaINT0164058 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030540 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr11:99247647-99249550:-
Coord C1 exon
chr11:99249439-99249550
Coord A exon
chr11:99247784-99249438
Coord C2 exon
chr11:99247647-99247783
Length
1655 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TCCCCCTCTGGCCTCTCCAGCAC
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGGGCCGAGGCGATGGCGCCCTGGGCGCTCCTCACCCCTGGGGTCCTGGTGCGGACCGGGCATACTGTGCTGACCTGGGGGATCACGTTGGTACTCTTCCTGCATGATACCG
Seq A exon
GTGAGCCGGAACCCTCGCGACCCCGGACCCACCCGATCCCGCGTGATTCCTCAGATGTTTGGGTCTCACTGAGTCCCTTGTCGAACCCCTCGGAGATCCTGGGATTCCCCCGACTCCTCCAGCGCCAGAGGCCCTCTCCCACCTCTCATTCCAAGAGCCACCTGCTTTCCGCCTAATACCCAGTTGATCTCTAATTAATCCCAGAATCTTCCTGATCCCTGCCAGATACCCTTGCCTGTCCCAGGACCCACCCGGTGCCCACCTGATCCGACGACCTATTCGAGACCCCATCTTCCCTGATCCTGGGACCCGCCCGACCCTTCCCAGGAATTGACTCCAAGATTCCGAGGATCAGCTAAATGAAGGGCTGGCATCCCGCCCACCCCATCCCTGCGTGGCCCTAGCTGCCCCAAGTCTGGGCTCCCCACCTTCAGGCAAGAGGACACGGCATAGGGGAACAGCCTGTCCCTCTTGTTCTCATCCCTGTGAGCGCTCATTCATTCCACCCACCCGCTTCCATCCTTCCCCCTCTTTACCTGCCACAGGGCACCTCCAGCACAGGCTTTCGCCCTTCCTCACTACCACCACCACAAGCCCCACCCCTTCCTCCTCGCTGCAGCCTAACCTCCTGGACCAGGGGCATTCTCACTTTCCTCCCAAGACCTGAGTCTCCTCCACTGGCTTCACCCCTTAGCCTAAAAACCTGCTCAGTCTCCCCACCAGAGAGAAACCCCCCACTGCAACCTCCTTTTCTTCTCCACTCCCTTTTACAGTCAAGGGGCACCTGAGTTGTCCATACTCTGATGTCTGGCTGGCTGACTCCTGCCTCTCCCTGCTCAGCCCTCCACCCCTTTCCCCCAAACCTTCAGTCACCTCCATGGGCTGGACCCTGAAGGTGGCCTGGACTCCCCTACAGCATTCCAACCTGCCAGCCACACCCTTCTCTCTCTCTGTTTCTTGTGTATCTCTGACCTGGCCAGCCTCTTCCCATCTCAGAGCCAGAGTCCTCCTCCCTGTACCCCATATCCAGCCAAGTCTGGTCCCCTCACCCCTTACCTCCAATCTGGCCAACCCCCCTGCCGTTACCCTTGCCCAGACACGCTCCTCTCTGTGTCCTGGATAGGCCTCCCCTCTGATCCATCTTTACTTTAGCACTAAGAAGGCTTTCAGAAACATGCATGCTAAGTCGCTTCAGTCATGTCTGACTGTGCAAACCTACGGGCTGTAACCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGATTGCCATTCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATGGAACTCGAGTCTCTTATGTCTCCTGCATTGGCAGGAGCTTCTTTATTGTTAGTGCCACCTGGGAAGCAGTTCAGAAAAATATCTGACCCTGTAAGCTTGCATGGTTCCCTACTGCCCTCCAGAGATAGTGTAGATTAACTGCTTTTTTTCTCTTCTCCCAAACCTGAACTTCTCCCTCCTGCACCCTATGTAGTGGCCACACCCGACCATTCATCAAACCCCATTTCCAGGACTTTGTTCAGCCAGGGACACACTTCCCCCCTCCAGTTGCACCCTCCCCCGCCACGCCGGTCCATGGTCCTGGCCTCACTCTCCCCCTCTGGCCTCTCCAG
Seq C2 exon
CACTTCGGCAGTGGGAAGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTGCTCGTGCTGGCCTCCCTGCTGCTTTACCTGACCGTGTCACTCATGGATCCGGGCTACGTGAATGTCCTGCCTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030540:ENSBTAT00000043115:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.0=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGACCGGGCATACT
R:
GGGCTGAGGCAGGACATTCA
Band lengths:
198-1853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development