DreINT0177581 @ danRer10
Intron Retention
Gene
ENSDARG00000052787 | zdhhc12b
Description
zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]
Coordinates
chr5:31220111-31223060:+
Coord C1 exon
chr5:31220111-31220589
Coord A exon
chr5:31220590-31222920
Coord C2 exon
chr5:31222921-31223060
Length
2331 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GATGTTCTTCTTGCACACAGACC
3' ss Score
7.91
Exon sequences
Seq C1 exon
AGGAAACATGACATGTACCCGTCCTCACATCTAAGCTGCGGAACGGCATCAACAAGCTTATTAGAGCGAAAGAAACACAGAATACTGAAGTACCGCCGTTTCGGTTGAATCACAATGTTATAGCCGTCTCCATTAGGCGTGCAGCATACGAACCCCGACGCCAGGGGACAAATATCCCGGTCAGAAATGGTTGTTGTTGTGGAATTTAGCGCAGGACGCGTAGGAGCGCACTTGACAGCTGGAATGTAACGTTAACTGGTTTCTGATGAGCTCGAGCAGGCTAACAAACACAGCTAGCTGATGATTACAGCTCTTATGACAATGTGTTTCTTTGCGAGTGCACAGCAGACGCATGCTTAGCAGGATATAGAAGTATGCTAGGATGTTCAAAAATGTGTTCGGTTCAGGATTTCTGGTGAGGACCGCTCATGTCATTTTGACATGGGTTATAACGCTGATTCTCTTCCTACACGACACCG
Seq A exon
GTAAGTGCTCGTTATAGACGCTTAATGTGCTATGAGAGCATGTGTTAGTCTCCATTCAAAGCATGTTATTTAATGGACGCTGAATGATAATGAATGAGATGAAGATGCTTCACACACCTGTTTCTGCATCTCTGAGTGTTTGACTCAAGTGTACTGCTGCTTTTACCTGTCATTTGTTATACTCTTATTACACACTCTGTCCAACTGGTTTACAGCATAGTCTACTGGACAGAATATCTTTCTACTCTATACATTTTGCTGGACTACACAGTGATGTGTTATGAAGTGTGTGTTTTCCCCTGCTCTTCTACATAGTTATTCTAATACAGTTACATACTGTAACAGTGCTCTGACTGCTACACTGTTGCATGATATGAGTCCACCATGCTTTATTCTACTTTCCACATTTACTGCTCTATATCCCAGTCTGCAACATTATATATCGCTTTACTTCTACTTAATAATAATAATACTAATAATGATGTTTTGGTACATTATAATAACTAGATTATTATAATGACTATTAGATTATAACTTTTCTGCAAAAACAAAATGAAATTACGGTGACTCGGAGAGCTCCAAAGCGCTGCAAGCTAAGAAAATACATGCAGATAGAAAAACAATAATAGAGAAAACATCATCGATCCACTTAAGCCGTGATGTATGAAATACTGTTTCCAGCTCCAAGCTGCTATTTACCTAAATTTAGAAAATGGTAGTTCATGACCACTTTGTAGTCAAATTACACACAAAAGAGATTTTCTTACAAAATCATGATGTACATCAGTGTTTCTCGACCATGTTGCTTGAGGACCACCAGCAATGCATATTTTGGATGTCTCCTTTGTCTGTTACACCCATTACAGGTCTTTCATTCTCTGCTAATGAGTTGATCTGAATCAGGTGTGTTTGGTTAAGGAGACATGGAAAATGTGCAAAGCTGGTGGTATTTGTATTGGTATTTATTGGTATTTATTAAGCCTTCCCATACAATTTGATAAATCAGTGACATCACACTTAATTGAATTTGACTACACATGGACATGCAAATTTATAAAACGCATACAAATAGCACAGACCACAATGGAAATGGTTTGGTGGACCACAAAAAGTAACAAAGCTGGTTGCTACATTAAAGAGGAAGCAGTTGCTGCTGGTTTATTTGCACCTCTTAAAGCACAGGTGTCAAACTCAGTTCCAAAAGGGCCGCAGCTCTGCACAGTTTAGTTCCAACCCTAATTGAACACACCTGATCAAACTAATTGAGTCCTTCAGGCTTGTTTGAAACCTACAATTGAGTTTTACACCCCTGTCTTAAAGGGATAGTTCAACCAAAATAAATAAATAAATAAATAAATAAAAAATTAATAGAAATTGACTCAGTGTTTCCAAACCTTTATGATTTTCTTTTTTCTGAAGAAGAGTTTTTTAGAAAGCAGAAAAGCTGCAACGATTGACTTCCATAGTAGGAAAAACAAATACTGTGGAGCATACTTCAAAATTGATTTTTTTGATGTTCAACAGATATAATTTTCAGTTTTGGGTGAACTATCCCTTTAACTCAAACCAGGTTTAGGAGTTCCCTCAATCAGTGTACATAAATCACAATTATGAAAAGAAAAGTTTAAATTATGATGACAGATCAATTTATGAAAAAAAGAAATAAAATAAAAATCAATGACACGAAAATTATGATATCTCAGGCCATTTTATTGAAGACCAAAAGGCATAGCTTTGTTAAAATGTAAAAAAAATAAATAAAAAAAATAAAAACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATTAATAATTATAGATAAAACTATTAGCAATAATATGTCAATGAGTGGTCTATAAAGGGTTAAATATTTTCAGCCATTTAGTGTGATGCTATGTACTTAAAAATAATGTTGTTGTTTTTTTATTGGCATCAGTGGTTCCATGAGGAGCCTTTTTAGTCCATGAAACCTTACATTCCACCTAAGGTTCTTTAAAGTTGCAAAATGTTAATGAGTAAAAGTTTGACTTTTTGCTTGTTTTTTTTTAAGTGCCAATTCATGAAGTGTAAAAAGCCTCAGGATCAGAGATTTTATTCTCACTAGATTCAATCCTCGAGTAATATAATTATTGTATTTGTTCTCCATTCTAACTTCTTTTACTTCTGTTCTACAATGATGATTCACTCCACTTCTCTACTGTGCTTTTTCCCCCACTGTACTATTGATTGTTCCGTAATACTGTGATGTTCTTCTTGCACACAG
Seq C2 exon
ACCTGCGCCGGCAGGAGGAGACTGGGGAGCTCACACTGCCGGTTCTCTTTGTGCTGCTGGTTCTGGTGTCTGTGTTGCTGTACTTTGCGGTCTCACTCATGGATCCTGGTTTTGTCCTGACTGATGACTGTGACTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052787:ENSDART00000110974:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.2=46.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]