MmuALTD0015985-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:29947925-29949109:-
Coord C1 exon
chr2:29949009-29949109
Coord A exon
NA
Coord C2 exon
chr2:29947925-29948061
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CTGTCCTCTGGCCTCCCCAGAGC
3' ss Score
9.56
Exon sequences
Seq C1 exon
CATGGCTCTTTGGCCGCCGCTTAACTCTGGGATGCTGGTGCGGACTGGGCACACCGTGCTGACCTGGGGAATCACTCTGGTGCTCTTCCTGCACGACACCG
Seq A exon
NA
Seq C2 exon
AGCTACGCCAATGGGAAGAGCAAGGGGAGCTGCTCCTGCCCCTCACATTCCTGCTCCTGGTGCTAAGCTCCCTGCTGCTTTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTACTCAGCCCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-0-2,1-2,2-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0152915=zf-DHHC=PU(13.0=45.7)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGGGGAATCACTCTGG
R:
GTCCATGAGTGACACAGCCAG
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: