MmuINT0052865 @ mm9
Intron Retention
Gene
ENSMUSG00000026810 | Dpm2
Description
dolichol-phosphate (beta-D) mannosyltransferase 2 [Source:MGI Symbol;Acc:MGI:1330238]
Coordinates
chr2:32426378-32426815:+
Coord C1 exon
chr2:32426378-32426432
Coord A exon
chr2:32426433-32426725
Coord C2 exon
chr2:32426726-32426815
Length
293 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GAGCCTTTATTTTTCTCCAGGCC
3' ss Score
7.98
Exon sequences
Seq C1 exon
GCCTAAACCAGGAACCGGATGTATTTTGTTGCTCCGGCGGAACGCTGGAGAGATG
Seq A exon
GTGAGCCTGGGGTGGAGTACATGTGTGATTTGAGGGTACCAGGGGTCGGGGCTCTGAGTAAGAGTCTCCTTGGGAGATGGAGTTGGGCTCTCCAAACCCAGATCGCTCTCTCCACCGCTTGCAGACAGGTGACACGAGGCCTGACGTGGCTTTCTAAACCCGAGAGCCACTTCTAGTAAGCCCTCCGTGGTTCTAAATGAATGAGAGGTTTGGAGTGTAAACCGGCTGCTCCGACCCTCCGTTAGTGCTTGTACACGAGCCATCTCGCCTGCTGAGCCTTTATTTTTCTCCAG
Seq C2 exon
GCCACCGGGACAGACCAAGCAGTAGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026810-Dpm2:NM_010073:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAACCAGGAACCGGATGTA
R:
CCCAAGTGGTGTAGTAGGTGA
Band lengths:
132-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: