GgaINT0126397 @ galGal4
Intron Retention
Gene
ENSGALG00000005066 | DPM2
Description
dolichol phosphate-mannose biosynthesis regulatory protein [Source:RefSeq peptide;Acc:NP_001186093]
Coordinates
chr17:4865441-4865694:+
Coord C1 exon
chr17:4865441-4865470
Coord A exon
chr17:4865471-4865604
Coord C2 exon
chr17:4865605-4865694
Length
134 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GACTCTCTCTCCCTTTGCAGGCC
3' ss Score
12.99
Exon sequences
Seq C1 exon
GCGGAAGGGCTCTCGGTGGCCGTCGCCATG
Seq A exon
GTGAGTGGGGCTGGGGCCTGGACTCCCTTCCCTTCTTTTTCCTTCTCTTCCAGGGTTTCCTTCCAGCCCGGGACAGGACAGCTGGAGCCGATCCCGCTGCTCCCGCGGAGCCCTGACTCTCTCTCCCTTTGCAG
Seq C2 exon
GCCACGGCGACGGACCGGGCGGTAGGGTTCGGCTTGGTGGCCTTCAGCCTCATTCTCTTCGTATACTACACGCTGTGGATCATCGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005066:ENSGALT00000008122:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175811=SBF=PU(37.7=96.7),PF085107=PIG-P=PU(34.2=90.0),PF072977=DPM2=PU(33.8=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGGCTCTCGGTGG
R:
CAGCACGATGATCCACAGC
Band lengths:
119-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]