DreINT0059681 @ danRer10
Intron Retention
Gene
ENSDARG00000095623 | dpm2
Description
dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Source:ZFIN;Acc:ZDB-GENE-030131-9093]
Coordinates
chr5:31115617-31116560:-
Coord C1 exon
chr5:31116503-31116560
Coord A exon
chr5:31115707-31116502
Coord C2 exon
chr5:31115617-31115706
Length
796 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CAAAAACTATTTATCTTAAGGCA
3' ss Score
3.08
Exon sequences
Seq C1 exon
TTGCCTGTCGGAAGTACGTACGTTTTACAGCTCATGCGGAAGTGGCACGTTCGTAATG
Seq A exon
GTAAGATGAAATTAAATGGGTATAAAATTGTTGTTTTGTCCTGTGTATTTATATATTTTGTATATTACAGAACACATTTTAAGACGCCTCGTCGTTCCTAGAGAGTTAACTTACTGTTCAATTTTCTAGTTAATGTGATGCGTCTGGTTCATGAGAGTTTCAGTTTTTAGACATGTTATATAACTTACTTTTTATTTAAAATTATATTTATTCATTACTTGTTCGTTCATAGTTTAAAGACCGCTGCTGAAAGCTAGGCCAATATATACTTTGCTGTGATCCAGAGATCCAGACAGAAAGTCTTTATAAGCTCTATGTATGTACATATGAAGAGTTCAGATGCAAAAACCTCTAACGTTAAGTGCCATCCTAAATTTCCATGGAAAATTTAAAATTTTTACCTACCTCCTTTGTTTATGTTGAGATATTTCACTTTAAAGAACAGGAAAAGGACTTATTCTTTGTCCTAAAGTGATATTACTGAACATACACACTGGAATCTGATAAAAATGCTTATTTTAGAGGAAAAACTCAGATGGCATTTAGAGATATTTGCATCTAAAATCTTCATACATGTTCTTAATTTATGTTAAACTTGAGGTAAAATTATTATTATTATTATTTTTGTTTTGATTGTAAAATACAATTGAAATAACCCCAAATAAGACTTAAGAAATTGTATATTATTTTATTGTATAATTTGTATAAATATTTTATTGAATTACTTATTTTTGCAATTTATATAAAATGTGATGTGTTAATATATGAGCTAAGCCCAAAAACTATTTATCTTAAG
Seq C2 exon
GCAACCGGAGCAGATCAAGCTGTTGGCTTTGGACTCGTTGGCTTTAGTCTTTTGCTGTTCACATATTACTCCATTTGGGTGGTAGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095623:ENSDART00000131443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF072977=DPM2=PU(34.2=90.0),PF085107=PIG-P=PU(33.8=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]