BtaINT0052341 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003388 | DPM2
Description
Bos taurus dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (DPM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046268]
Coordinates
chr11:98615232-98615633:-
Coord C1 exon
chr11:98615610-98615633
Coord A exon
chr11:98615322-98615609
Coord C2 exon
chr11:98615232-98615321
Length
288 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GAATCCTCCCTTTTCTGCAGGCC
3' ss Score
8.77
Exon sequences
Seq C1 exon
AGTACCTGAAGCGCCAGGGAAATG
Seq A exon
GTGAGCGTGAGGCCGAATGTCGGCAAAGGGGGCGTCTGGAGGGTGGGGTCCTGCGTCTGCTCAGGAGCTGGGGCTTGAGCACTCGGAGCCGGTATCGTTCTCCTGCCGTCTCATCGTACGAGTGATAGACTTTGGCCCGGTACTCTCTCTCCCGACCTAGAAAAGATACCTAGTCAGCCACGTCACATATAGTCAGCTGAGTAAATGGACGTGATCGGGCCGCAACGACTACCCCCTCCTTCCCAAATGGAGGATCTTTTCCTCAGTTGAATCCTCCCTTTTCTGCAG
Seq C2 exon
GCCACGGGAACAGACCAAGTGGTGGGCCTCGGCCTCGTCGCCCTTAGCCTGATCATCTTCACTTATTACACCGCCTGGGTAATTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003388:ENSBTAT00000004393:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139031=Claudin_2=PU(34.9=96.7),PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development