MmuEX6100969 @ mm9
Exon Skipping
Gene
ENSMUSG00000026751 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:MGI Symbol;Acc:MGI:1346833]
Coordinates
chr2:38557487-38566071:-
Coord C1 exon
chr2:38565930-38566071
Coord A exon
chr2:38563431-38564059
Coord C2 exon
chr2:38557487-38557606
Length
629 bp
Sequences
Splice sites
3' ss Seq
CAGACTGCTCCTGCCCACAGCTG
3' ss Score
8.43
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTTCTTCAAGCGCACAGTCCAGAACAACAAGCATTACACGTGCACCGAGAGTCAGAGCTGCAAAATCGACAAGACGCAGCGTAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGCATGCGCCTGGAAG
Seq A exon
CTGTGCGTGCTGATCGAATGCGGGGTGGCCGGAACAAGTTTGGGCCCATGTACAAGAGAGACCGGGCCTTGAAGCAGCAGAAGAAAGCACAGATTCGGGCCAATGGCTTCAAGCTGGAGACCGGACCACCGATGGGGGTGCCCCCGCCACCCCCTCCCCCACCGGACTACATGTTACCCCCTAGCCTGCACGCACCGGAGCCCAAGGCCCTGGTCTCTGGCCCACCCAGTGGGCCGCTGGGTGACTTTGGAGCCCCATCTCTACCCATGGCTGTGCCTGGTCCCCACGGACCTCTGGCTGGCTACCTCTATCCTGCCTTCTCTAACCGCACCATCAAGTCTGAGTATCCAGAGCCCTATGCCAGCCCCCCACAACAGCCAGGGCCACCCTACAGCTATCCAGAGCCCTTCTCAGGAGGGCCCAATGTACCAGAGCTCATATTGCAGCTGCTGCAACTAGAGCCAGAGGAGGACCAGGTGCGCGCTCGCATCGTGGGCTGTCTGCAGGAGCCAGCCAAAAGCCGCTCTGACCAGCCAGCGCCCTTCAGCCTCCTCTGCAGAATGGCCGACCAGACCTTTATCTCCATTGTCGACTGGGCACGAAGGTGCATGGTCTTTAAGGAGCTGGAG
Seq C2 exon
GTGGCTGACCAGATGACACTGCTGCAGAACTGTTGGAGCGAGCTGCTGGTGTTGGACCACATCTACCGCCAGGTCCAGTACGGCAAGGAAGACAGCATCCTGCTGGTTACTGGACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026751-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8),PF038549=zf-P11=PD(80.8=87.5)
A:
PF0010425=Hormone_recep=PU(19.8=19.5)
C2:
PF0010425=Hormone_recep=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCAAGCGCACAGTCCAG
R:
GTCCAGTAACCAGCAGGATGC
Band lengths:
254-883
Functional annotations
There are 1 annotated functions for this event
PMID: 19995909
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, gal4 vp16 complementation, mutation analysis. ELM ID: ELMI002003; ELM sequence: PYASPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: