GgaEX0001171 @ galGal3
Exon Skipping
Gene
ENSGALG00000001080 | NR5A1
Description
NA
Coordinates
chr17:10152770-10162244:-
Coord C1 exon
chr17:10162103-10162244
Coord A exon
chr17:10159187-10159827
Coord C2 exon
chr17:10152770-10152889
Length
641 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCCTCTGCCCACAGCCG
3' ss Score
10.33
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCTTCTTCAAGAGGACCGTGCAGAACAACAAGCACTACACCTGCACCGAGAGCCAGAACTGCAAGATCGACAAGACCCAGAGGAAGCGCTGCCCCTACTGCCGCTTCCAGAAGTGCCTGACCGTGGGGATGCGCCTGGAAG
Seq A exon
CCGTGCGCGCGGATCGGATGCGCGGCGGGAGGAATAAGTTTGGGCCCATGTACAAACGGGACCGTGCCTTAAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCTTCAAGCTGGAGACGGTGCCACAGATCGTGTCACCTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATCCTGTCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAAGATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAG
Seq C2 exon
GTGGGAGACCAGATGAAGCTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTGTTCGACCACGTGTACCGGCAGCTGCAGCACGGCAAAGAGCACAGTGTGCTGCTGGTCACCGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010425=Hormone_recep=PU(21.6=97.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTTCAAGAGGACCGTG
R:
CTCCTGCCCGGTGACCAG
Band lengths:
262-903
Functional annotations
There are 1 annotated functions for this event
PMID: 19995909
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, gal4 vp16 complementation, mutation analysis. ELM ID: ELMI002003; ELM sequence: PYASPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]