BtaEX6046099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009017 | NR5A1
Description
Bos taurus nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174403]
Coordinates
chr11:95524479-95534538:-
Coord C1 exon
chr11:95534397-95534538
Coord A exon
chr11:95531614-95532239
Coord C2 exon
chr11:95524479-95524598
Length
626 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCCTCTGCCCACAGCTG
3' ss Score
12.47
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGCCAGAGCTGCAAGATCGACAAGACTCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAG
Seq A exon
CTGTGCGCGCTGACCGCATGCGAGGCGGCCGGAACAAGTTTGGGCCCATGTACAAGCGGGACCGGGCCCTGAAGCAGCAGAAGAAGGCACAGATTCGAGCCAATGGCTTCAAGCTGGAGACAGGCCCCCCAGTGGGGGTGCCCCCGCCGCCCCCTCCCCCACCGGACTACATGCTGCCCCATGGCCTGCATGCATCTGAGCCCAAGGGCCTGGCCTCAGGTCCACCAGCTGGGCCACTGGGCGACTTTGGGGCCCCAGCGTTGCCTATGGCTGTGCCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTACCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCAGAGCCCTATGCCAGCCCCCCACAGCCCGGGCCACCCTACGGCTACCCAGAGCCCTTCTCGGGGGGGCCTGGTGTGCCCGAGCTTATCCTCCAGCTGCTGCAGCTGGAGCCAGATGAGGACCAAGTGCGGGCACGCATCGTGGGCTGCCTGCAGGAACCGGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTGCAGGATGGCCGACCAGACCTTCATCTCCATCGTGGACTGGGCACGCAGGTGCATGGTCTTCAAGGAGCTGGAG
Seq C2 exon
GTGGCCGACCAGATGACACTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTTTTTGACCACATCTACCGTCAGATTCAGCATGGCAAGGAGGGCAGCATCCTGCTGGTCACAGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009017-'9-4,'9-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(64.3=93.8),PF038549=zf-P11=PD(80.8=87.5)
A:
PF0010425=Hormone_recep=PU(19.0=18.7)
C2:
PF0010425=Hormone_recep=FE(19.0=100)
Main Skipping Isoform:
ENSBTAT00000011869fB4790
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTTCAAGCGCACGGT
R:
CCTGTGACCAGCAGGATGC
Band lengths:
254-880
Functional annotations
There are 1 annotated functions for this event
PMID: 19995909
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, gal4 vp16 complementation, mutation analysis. ELM ID: ELMI002003; ELM sequence: PYASPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]